miRNA display CGI


Results 61 - 80 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18995 5' -61.1 NC_004684.1 + 33489 0.69 0.287813
Target:  5'- gGUGgaCGCGGCGGCGGcccuguacucGCGgGCGguGGc -3'
miRNA:   3'- -CAC--GCGCCGCCGCU----------UGCaCGCguCCu -5'
18995 5' -61.1 NC_004684.1 + 33060 0.68 0.371452
Target:  5'- uUGCGUcgaGGCGGCGAgguuggccagcGCGaGCGCcuGGAg -3'
miRNA:   3'- cACGCG---CCGCCGCU-----------UGCaCGCGu-CCU- -5'
18995 5' -61.1 NC_004684.1 + 31732 0.67 0.414585
Target:  5'- -aGCGUcccGGCGGgGAugGUGUaGCGcGGAc -3'
miRNA:   3'- caCGCG---CCGCCgCUugCACG-CGU-CCU- -5'
18995 5' -61.1 NC_004684.1 + 31485 0.68 0.347082
Target:  5'- -cGCGuUGGCcugguuGGCGAGCGUGaUGguGGAc -3'
miRNA:   3'- caCGC-GCCG------CCGCUUGCAC-GCguCCU- -5'
18995 5' -61.1 NC_004684.1 + 29761 0.72 0.198584
Target:  5'- -cGCGCGGUcuGGuCGGcCGcGCGCAGGAg -3'
miRNA:   3'- caCGCGCCG--CC-GCUuGCaCGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 28728 0.69 0.30906
Target:  5'- -gGCGCGucuGCGGCaccGACGUGCGguGcGAg -3'
miRNA:   3'- caCGCGC---CGCCGc--UUGCACGCguC-CU- -5'
18995 5' -61.1 NC_004684.1 + 28579 0.67 0.423574
Target:  5'- gGUGUGCGGCGGCu-GCcUGCcgguCGGGGa -3'
miRNA:   3'- -CACGCGCCGCCGcuUGcACGc---GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 28293 0.66 0.46924
Target:  5'- -aGCGCaGGCuGGCGGugcuguccACGUGCGCcucgcgcAGGu -3'
miRNA:   3'- caCGCG-CCG-CCGCU--------UGCACGCG-------UCCu -5'
18995 5' -61.1 NC_004684.1 + 28273 0.66 0.440971
Target:  5'- gGUGCGCgaGGCcGCuGGCGUGgugcucaCGCAGGAg -3'
miRNA:   3'- -CACGCG--CCGcCGcUUGCAC-------GCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 27983 0.69 0.316403
Target:  5'- aGUGCGgaguuCGGCGGCGucuGgGUGaUGCAGGu -3'
miRNA:   3'- -CACGC-----GCCGCCGCu--UgCAC-GCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 27169 0.66 0.479837
Target:  5'- cUGgGCGGCGauguccacgccuGCGGACccgGCGCuGGAg -3'
miRNA:   3'- cACgCGCCGC------------CGCUUGca-CGCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 26583 0.75 0.127497
Target:  5'- -cGCGCGGCGGU----GUGCGCGGGu -3'
miRNA:   3'- caCGCGCCGCCGcuugCACGCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 25643 0.67 0.414585
Target:  5'- uGUGCcguucgagaGCGGCGGCGGuaccGgGCAGGGc -3'
miRNA:   3'- -CACG---------CGCCGCCGCUugcaCgCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 25563 0.66 0.479837
Target:  5'- -gGCGCGGUGGa--AgGUGCGCuacccGGAg -3'
miRNA:   3'- caCGCGCCGCCgcuUgCACGCGu----CCU- -5'
18995 5' -61.1 NC_004684.1 + 25471 0.74 0.145528
Target:  5'- uGUGCGCGGCGGCGua-G-GCGCugaccGGGu -3'
miRNA:   3'- -CACGCGCCGCCGCuugCaCGCGu----CCU- -5'
18995 5' -61.1 NC_004684.1 + 24261 0.66 0.429936
Target:  5'- uUGgGCGGCGGCaccgccugcGGACccugcaccggagcgGUGCGCAGcGGg -3'
miRNA:   3'- cACgCGCCGCCG---------CUUG--------------CACGCGUC-CU- -5'
18995 5' -61.1 NC_004684.1 + 23714 0.65 0.486641
Target:  5'- cUGgGCGGCGGCGcgcucaacaucgcuGGCG-GCGCAc-- -3'
miRNA:   3'- cACgCGCCGCCGC--------------UUGCaCGCGUccu -5'
18995 5' -61.1 NC_004684.1 + 23333 0.66 0.432679
Target:  5'- uUGCGUGGUGGCGucGCGgaGCcauuuCAGGAa -3'
miRNA:   3'- cACGCGCCGCCGCu-UGCa-CGc----GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 22449 0.71 0.225291
Target:  5'- -gGCGCGGCGGCGAucccGCccGCGCuccAGGc -3'
miRNA:   3'- caCGCGCCGCCGCU----UGcaCGCG---UCCu -5'
18995 5' -61.1 NC_004684.1 + 22359 0.75 0.117694
Target:  5'- -gGCgGCGGCGGCGGucGCGcugGCGguGGAc -3'
miRNA:   3'- caCG-CGCCGCCGCU--UGCa--CGCguCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.