Results 81 - 100 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18995 | 5' | -61.1 | NC_004684.1 | + | 22187 | 0.7 | 0.280991 |
Target: 5'- ---gGCGGCGGCGAccgccuuCGgacugGCGCAGGu -3' miRNA: 3'- cacgCGCCGCCGCUu------GCa----CGCGUCCu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 21376 | 0.66 | 0.470199 |
Target: 5'- uUGCGCagauacGGCcgGGCGcGCGUGC-CGGGGu -3' miRNA: 3'- cACGCG------CCG--CCGCuUGCACGcGUCCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 21249 | 0.68 | 0.347082 |
Target: 5'- cGUGgacaGCuGCGGCGuauuucGCGUGCGCGGuGAc -3' miRNA: 3'- -CACg---CGcCGCCGCu-----UGCACGCGUC-CU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 21240 | 0.69 | 0.287813 |
Target: 5'- -gGCGUGGCcGCGAGguguuCGUGCGcCAGGu -3' miRNA: 3'- caCGCGCCGcCGCUU-----GCACGC-GUCCu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 20890 | 0.67 | 0.396964 |
Target: 5'- -cGuCGCGGCuGGCGuuGCGUGcCGguGGc -3' miRNA: 3'- caC-GCGCCG-CCGCu-UGCAC-GCguCCu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 20448 | 0.69 | 0.287813 |
Target: 5'- uGUGCaCGGCGGCGAagAUGcUGCGCAc-- -3' miRNA: 3'- -CACGcGCCGCCGCU--UGC-ACGCGUccu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 20120 | 0.68 | 0.347082 |
Target: 5'- cUGgGCGGCGGCaccaaGAACGUGCGg---- -3' miRNA: 3'- cACgCGCCGCCG-----CUUGCACGCguccu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 19446 | 0.7 | 0.267733 |
Target: 5'- cGUGCGCccaugcccgGGCGGCGGugGcccgcgcgacaUGCGCcccuGGAg -3' miRNA: 3'- -CACGCG---------CCGCCGCUugC-----------ACGCGu---CCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 18428 | 0.7 | 0.267733 |
Target: 5'- -gGCGCaccGGCGGCcGACGUGgcucccgaGCAGGAc -3' miRNA: 3'- caCGCG---CCGCCGcUUGCACg-------CGUCCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 16790 | 0.67 | 0.396964 |
Target: 5'- -gGUGCGGC-GCGu-CGUGUGguGGGc -3' miRNA: 3'- caCGCGCCGcCGCuuGCACGCguCCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 16749 | 0.66 | 0.479837 |
Target: 5'- -aGCGCGGCuGGCcugGAACu--CGCGGGGa -3' miRNA: 3'- caCGCGCCG-CCG---CUUGcacGCGUCCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 15250 | 0.73 | 0.169776 |
Target: 5'- gGUGCGUGGCGGCG-GCGgccagcUGCGCGcuggcguGGAu -3' miRNA: 3'- -CACGCGCCGCCGCuUGC------ACGCGU-------CCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 13721 | 1.08 | 0.00042 |
Target: 5'- gGUGCGCGGCGGCGAACGUGCGCAGGAa -3' miRNA: 3'- -CACGCGCCGCCGCUUGCACGCGUCCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 13022 | 0.66 | 0.470199 |
Target: 5'- gGUGcCGaCGGCGGCGAaguuggccgACG-GCGCAccGGc -3' miRNA: 3'- -CAC-GC-GCCGCCGCU---------UGCaCGCGU--CCu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 12018 | 0.69 | 0.323877 |
Target: 5'- --uCGCGGCGGCGGugGccaagGCcaugcucgaccaGCAGGAg -3' miRNA: 3'- cacGCGCCGCCGCUugCa----CG------------CGUCCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 11879 | 0.73 | 0.154985 |
Target: 5'- -gGCGCuGGCGGUGAacacaccgggauucaACGUGCGCGGc- -3' miRNA: 3'- caCGCG-CCGCCGCU---------------UGCACGCGUCcu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 10982 | 0.66 | 0.470199 |
Target: 5'- -aGCGCGaucaccgcGuCGGUGAACGUGCGgaAGGu -3' miRNA: 3'- caCGCGC--------C-GCCGCUUGCACGCg-UCCu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 10248 | 0.66 | 0.441897 |
Target: 5'- -aGCGCGGUGGCcAGCG-GCgGCuGGc -3' miRNA: 3'- caCGCGCCGCCGcUUGCaCG-CGuCCu -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 10233 | 0.71 | 0.225291 |
Target: 5'- gGUGCGCGaGCaGCuGGcCGUGCGCGuGGAg -3' miRNA: 3'- -CACGCGC-CGcCG-CUuGCACGCGU-CCU- -5' |
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18995 | 5' | -61.1 | NC_004684.1 | + | 9660 | 0.67 | 0.423574 |
Target: 5'- -cGgGCGGCGGUGAA-GcGCGCGGu- -3' miRNA: 3'- caCgCGCCGCCGCUUgCaCGCGUCcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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