Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 18995 | 5' | -61.1 | NC_004684.1 | + | 8822 | 0.72 | 0.179246 |
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Target: 5'- -gGCGCGGCGGCGAACaucgggaucaGCGCcgccauGGAg -3' miRNA: 3'- caCGCGCCGCCGCUUGca--------CGCGu-----CCU- -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 7592 | 0.67 | 0.388335 |
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Target: 5'- -cGCGCGGCGGCcAGC--GCGUAGa- -3' miRNA: 3'- caCGCGCCGCCGcUUGcaCGCGUCcu -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 6420 | 0.67 | 0.378987 |
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Target: 5'- -aGCuCGGCGGCGGcgugaacgccuucGCGcuuggccgagGCGCAGGGg -3' miRNA: 3'- caCGcGCCGCCGCU-------------UGCa---------CGCGUCCU- -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 6360 | 0.67 | 0.423574 |
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Target: 5'- aUGU-CGGCGGCGAugGccugcgcguUGCGCAGc- -3' miRNA: 3'- cACGcGCCGCCGCUugC---------ACGCGUCcu -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 6161 | 0.68 | 0.355077 |
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Target: 5'- ---gGCGGCGGCcAGCGUGCgGCGGu- -3' miRNA: 3'- cacgCGCCGCCGcUUGCACG-CGUCcu -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 5791 | 0.66 | 0.459712 |
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Target: 5'- cUGCGCcaGGCGuGCGAggucgggACGUGcCGCAccguGGAg -3' miRNA: 3'- cACGCG--CCGC-CGCU-------UGCAC-GCGU----CCU- -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 3787 | 0.71 | 0.235044 |
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Target: 5'- -aGCGCGGCGGCGcuGgcgaucuccugccaGCGUGCcaaCAGGGu -3' miRNA: 3'- caCGCGCCGCCGC--U--------------UGCACGc--GUCCU- -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 2265 | 0.69 | 0.287813 |
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Target: 5'- -aGCGCGGCGGCGGGCauUGcCGCcagccuGGGc -3' miRNA: 3'- caCGCGCCGCCGCUUGc-AC-GCGu-----CCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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