miRNA display CGI


Results 61 - 80 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18995 5' -61.1 NC_004684.1 + 28728 0.69 0.30906
Target:  5'- -gGCGCGucuGCGGCaccGACGUGCGguGcGAg -3'
miRNA:   3'- caCGCGC---CGCCGc--UUGCACGCguC-CU- -5'
18995 5' -61.1 NC_004684.1 + 65773 0.69 0.294765
Target:  5'- -cGCGCGcCGGUGGGCGcGCGCAcGGc -3'
miRNA:   3'- caCGCGCcGCCGCUUGCaCGCGU-CCu -5'
18995 5' -61.1 NC_004684.1 + 64542 0.69 0.287813
Target:  5'- -gGCuCGGCGGCcuuggugaccGggUugGUGCGCAGGAu -3'
miRNA:   3'- caCGcGCCGCCG----------CuuG--CACGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 33489 0.69 0.287813
Target:  5'- gGUGgaCGCGGCGGCGGcccuguacucGCGgGCGguGGc -3'
miRNA:   3'- -CAC--GCGCCGCCGCU----------UGCaCGCguCCu -5'
18995 5' -61.1 NC_004684.1 + 43487 0.7 0.267733
Target:  5'- -gGUGCGGCgGGCGcAGCG-GCaGCAGGu -3'
miRNA:   3'- caCGCGCCG-CCGC-UUGCaCG-CGUCCu -5'
18995 5' -61.1 NC_004684.1 + 18428 0.7 0.267733
Target:  5'- -gGCGCaccGGCGGCcGACGUGgcucccgaGCAGGAc -3'
miRNA:   3'- caCGCG---CCGCCGcUUGCACg-------CGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 46601 0.7 0.274298
Target:  5'- -gGCGaCGGCGGCGGuuugguACGaGCGCAGu- -3'
miRNA:   3'- caCGC-GCCGCCGCU------UGCaCGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 22187 0.7 0.280991
Target:  5'- ---gGCGGCGGCGAccgccuuCGgacugGCGCAGGu -3'
miRNA:   3'- cacgCGCCGCCGCUu------GCa----CGCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 2265 0.69 0.287813
Target:  5'- -aGCGCGGCGGCGGGCauUGcCGCcagccuGGGc -3'
miRNA:   3'- caCGCGCCGCCGCUUGc-AC-GCGu-----CCU- -5'
18995 5' -61.1 NC_004684.1 + 20448 0.69 0.287813
Target:  5'- uGUGCaCGGCGGCGAagAUGcUGCGCAc-- -3'
miRNA:   3'- -CACGcGCCGCCGCU--UGC-ACGCGUccu -5'
18995 5' -61.1 NC_004684.1 + 21240 0.69 0.287813
Target:  5'- -gGCGUGGCcGCGAGguguuCGUGCGcCAGGu -3'
miRNA:   3'- caCGCGCCGcCGCUU-----GCACGC-GUCCu -5'
18995 5' -61.1 NC_004684.1 + 48381 0.72 0.193585
Target:  5'- gGUGCGCgaaGGcCGGUgGGACGUGCGCAuGGu -3'
miRNA:   3'- -CACGCG---CC-GCCG-CUUGCACGCGU-CCu -5'
18995 5' -61.1 NC_004684.1 + 8822 0.72 0.179246
Target:  5'- -gGCGCGGCGGCGAACaucgggaucaGCGCcgccauGGAg -3'
miRNA:   3'- caCGCGCCGCCGCUUGca--------CGCGu-----CCU- -5'
18995 5' -61.1 NC_004684.1 + 15250 0.73 0.169776
Target:  5'- gGUGCGUGGCGGCG-GCGgccagcUGCGCGcuggcguGGAu -3'
miRNA:   3'- -CACGCGCCGCCGCuUGC------ACGCGU-------CCU- -5'
18995 5' -61.1 NC_004684.1 + 62439 0.73 0.165856
Target:  5'- gGUGCGCaGGCuGGCGcGCGcUGUGCuGGAg -3'
miRNA:   3'- -CACGCG-CCG-CCGCuUGC-ACGCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 59625 0.73 0.153371
Target:  5'- -cGCGCuGGCGGUgcaGGACcuGUGCGCAGGc -3'
miRNA:   3'- caCGCG-CCGCCG---CUUG--CACGCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 25471 0.74 0.145528
Target:  5'- uGUGCGCGGCGGCGua-G-GCGCugaccGGGu -3'
miRNA:   3'- -CACGCGCCGCCGCuugCaCGCGu----CCU- -5'
18995 5' -61.1 NC_004684.1 + 42227 0.74 0.143247
Target:  5'- cGUGCGUGGUGGCGucgGCGUugaacaccaugucgcGCGCGGuGAa -3'
miRNA:   3'- -CACGCGCCGCCGCu--UGCA---------------CGCGUC-CU- -5'
18995 5' -61.1 NC_004684.1 + 40707 0.78 0.072237
Target:  5'- -cGCGCGGCGGUGAucaACGUGgUGCuGGAc -3'
miRNA:   3'- caCGCGCCGCCGCU---UGCAC-GCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 27169 0.66 0.479837
Target:  5'- cUGgGCGGCGauguccacgccuGCGGACccgGCGCuGGAg -3'
miRNA:   3'- cACgCGCCGC------------CGCUUGca-CGCGuCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.