miRNA display CGI


Results 81 - 100 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18995 5' -61.1 NC_004684.1 + 31732 0.67 0.414585
Target:  5'- -aGCGUcccGGCGGgGAugGUGUaGCGcGGAc -3'
miRNA:   3'- caCGCG---CCGCCgCUugCACG-CGU-CCU- -5'
18995 5' -61.1 NC_004684.1 + 24261 0.66 0.429936
Target:  5'- uUGgGCGGCGGCaccgccugcGGACccugcaccggagcgGUGCGCAGcGGg -3'
miRNA:   3'- cACgCGCCGCCG---------CUUG--------------CACGCGUC-CU- -5'
18995 5' -61.1 NC_004684.1 + 23333 0.66 0.432679
Target:  5'- uUGCGUGGUGGCGucGCGgaGCcauuuCAGGAa -3'
miRNA:   3'- cACGCGCCGCCGCu-UGCa-CGc----GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 10248 0.66 0.441897
Target:  5'- -aGCGCGGUGGCcAGCG-GCgGCuGGc -3'
miRNA:   3'- caCGCGCCGCCGcUUGCaCG-CGuCCu -5'
18995 5' -61.1 NC_004684.1 + 59054 0.66 0.441897
Target:  5'- -aGCGCGGCagcucGGCGGACaGggcccgGCGCAaGGc -3'
miRNA:   3'- caCGCGCCG-----CCGCUUG-Ca-----CGCGU-CCu -5'
18995 5' -61.1 NC_004684.1 + 65844 0.69 0.316403
Target:  5'- -cGCGCGGCGGCcAACGccCGCgAGGc -3'
miRNA:   3'- caCGCGCCGCCGcUUGCacGCG-UCCu -5'
18995 5' -61.1 NC_004684.1 + 52796 0.69 0.30906
Target:  5'- -aGCGUGGCgaGGCcGACGgGCGCgAGGAc -3'
miRNA:   3'- caCGCGCCG--CCGcUUGCaCGCG-UCCU- -5'
18995 5' -61.1 NC_004684.1 + 40707 0.78 0.072237
Target:  5'- -cGCGCGGCGGUGAucaACGUGgUGCuGGAc -3'
miRNA:   3'- caCGCGCCGCCGCU---UGCAC-GCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 42227 0.74 0.143247
Target:  5'- cGUGCGUGGUGGCGucgGCGUugaacaccaugucgcGCGCGGuGAa -3'
miRNA:   3'- -CACGCGCCGCCGCu--UGCA---------------CGCGUC-CU- -5'
18995 5' -61.1 NC_004684.1 + 25471 0.74 0.145528
Target:  5'- uGUGCGCGGCGGCGua-G-GCGCugaccGGGu -3'
miRNA:   3'- -CACGCGCCGCCGCuugCaCGCGu----CCU- -5'
18995 5' -61.1 NC_004684.1 + 59625 0.73 0.153371
Target:  5'- -cGCGCuGGCGGUgcaGGACcuGUGCGCAGGc -3'
miRNA:   3'- caCGCG-CCGCCG---CUUG--CACGCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 62439 0.73 0.165856
Target:  5'- gGUGCGCaGGCuGGCGcGCGcUGUGCuGGAg -3'
miRNA:   3'- -CACGCG-CCG-CCGCuUGC-ACGCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 15250 0.73 0.169776
Target:  5'- gGUGCGUGGCGGCG-GCGgccagcUGCGCGcuggcguGGAu -3'
miRNA:   3'- -CACGCGCCGCCGCuUGC------ACGCGU-------CCU- -5'
18995 5' -61.1 NC_004684.1 + 8822 0.72 0.179246
Target:  5'- -gGCGCGGCGGCGAACaucgggaucaGCGCcgccauGGAg -3'
miRNA:   3'- caCGCGCCGCCGCUUGca--------CGCGu-----CCU- -5'
18995 5' -61.1 NC_004684.1 + 48381 0.72 0.193585
Target:  5'- gGUGCGCgaaGGcCGGUgGGACGUGCGCAuGGu -3'
miRNA:   3'- -CACGCG---CC-GCCG-CUUGCACGCGU-CCu -5'
18995 5' -61.1 NC_004684.1 + 29761 0.72 0.198584
Target:  5'- -cGCGCGGUcuGGuCGGcCGcGCGCAGGAg -3'
miRNA:   3'- caCGCGCCG--CC-GCUuGCaCGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 45516 0.72 0.207341
Target:  5'- aUGaGCGGCGGCGacaccgaggccaagGugGUGCGcCAGGGu -3'
miRNA:   3'- cACgCGCCGCCGC--------------UugCACGC-GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 3787 0.71 0.235044
Target:  5'- -aGCGCGGCGGCGcuGgcgaucuccugccaGCGUGCcaaCAGGGu -3'
miRNA:   3'- caCGCGCCGCCGC--U--------------UGCACGc--GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 36844 0.7 0.267733
Target:  5'- -gGCGCGGCccuGGCG-GCGUcaGCGcCGGGAc -3'
miRNA:   3'- caCGCGCCG---CCGCuUGCA--CGC-GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 42706 0.69 0.301847
Target:  5'- -gGCgGCGGCGGgGGAgGUGC-CGGGu -3'
miRNA:   3'- caCG-CGCCGCCgCUUgCACGcGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.