Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 18995 | 5' | -61.1 | NC_004684.1 | + | 45516 | 0.72 | 0.207341 |
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Target: 5'- aUGaGCGGCGGCGacaccgaggccaagGugGUGCGcCAGGGu -3' miRNA: 3'- cACgCGCCGCCGC--------------UugCACGC-GUCCU- -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 3787 | 0.71 | 0.235044 |
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Target: 5'- -aGCGCGGCGGCGcuGgcgaucuccugccaGCGUGCcaaCAGGGu -3' miRNA: 3'- caCGCGCCGCCGC--U--------------UGCACGc--GUCCU- -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 36844 | 0.7 | 0.267733 |
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Target: 5'- -gGCGCGGCccuGGCG-GCGUcaGCGcCGGGAc -3' miRNA: 3'- caCGCGCCG---CCGCuUGCA--CGC-GUCCU- -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 42706 | 0.69 | 0.301847 |
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Target: 5'- -gGCgGCGGCGGgGGAgGUGC-CGGGu -3' miRNA: 3'- caCG-CGCCGCCgCUUgCACGcGUCCu -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 52796 | 0.69 | 0.30906 |
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Target: 5'- -aGCGUGGCgaGGCcGACGgGCGCgAGGAc -3' miRNA: 3'- caCGCGCCG--CCGcUUGCaCGCG-UCCU- -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 65844 | 0.69 | 0.316403 |
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Target: 5'- -cGCGCGGCGGCcAACGccCGCgAGGc -3' miRNA: 3'- caCGCGCCGCCGcUUGCacGCG-UCCu -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 21249 | 0.68 | 0.347082 |
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Target: 5'- cGUGgacaGCuGCGGCGuauuucGCGUGCGCGGuGAc -3' miRNA: 3'- -CACg---CGcCGCCGCu-----UGCACGCGUC-CU- -5' |
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| 18995 | 5' | -61.1 | NC_004684.1 | + | 13721 | 1.08 | 0.00042 |
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Target: 5'- gGUGCGCGGCGGCGAACGUGCGCAGGAa -3' miRNA: 3'- -CACGCGCCGCCGCUUGCACGCGUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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