miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18995 5' -61.1 NC_004684.1 + 28273 0.66 0.440971
Target:  5'- gGUGCGCgaGGCcGCuGGCGUGgugcucaCGCAGGAg -3'
miRNA:   3'- -CACGCG--CCGcCGcUUGCAC-------GCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 9660 0.67 0.423574
Target:  5'- -cGgGCGGCGGUGAA-GcGCGCGGu- -3'
miRNA:   3'- caCgCGCCGCCGCUUgCaCGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 57158 0.66 0.432679
Target:  5'- aUG-GCGGCGGUGGccgacgcgcACGcucggGCGCAGGc -3'
miRNA:   3'- cACgCGCCGCCGCU---------UGCa----CGCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 61495 0.66 0.432679
Target:  5'- -cGCGCaGGCGGCGGcgcuCGaUGCGCGc-- -3'
miRNA:   3'- caCGCG-CCGCCGCUu---GC-ACGCGUccu -5'
18995 5' -61.1 NC_004684.1 + 66681 0.67 0.42448
Target:  5'- gGUGCccaggucuucccaccCGGCGGCGGucuuGCGcUGCGCGGcGAa -3'
miRNA:   3'- -CACGc--------------GCCGCCGCU----UGC-ACGCGUC-CU- -5'
18995 5' -61.1 NC_004684.1 + 28579 0.67 0.423574
Target:  5'- gGUGUGCGGCGGCu-GCcUGCcgguCGGGGa -3'
miRNA:   3'- -CACGCGCCGCCGcuUGcACGc---GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 48732 0.67 0.423574
Target:  5'- uUGC-CGGUGGCG-AUGUG-GCAGGc -3'
miRNA:   3'- cACGcGCCGCCGCuUGCACgCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 66881 0.67 0.423574
Target:  5'- -aGCGcCGGUGGCGAccuuCG-GCGCGGc- -3'
miRNA:   3'- caCGC-GCCGCCGCUu---GCaCGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 47129 0.67 0.414585
Target:  5'- cGUGCGCcucGGUGGCGuagGCGgccccgGUGCccAGGAg -3'
miRNA:   3'- -CACGCG---CCGCCGCu--UGCa-----CGCG--UCCU- -5'
18995 5' -61.1 NC_004684.1 + 34085 0.73 0.161176
Target:  5'- -gGCGCGGCGggcGCGAACaacgcgaGUGCGCAGa- -3'
miRNA:   3'- caCGCGCCGC---CGCUUG-------CACGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 20448 0.69 0.287813
Target:  5'- uGUGCaCGGCGGCGAagAUGcUGCGCAc-- -3'
miRNA:   3'- -CACGcGCCGCCGCU--UGC-ACGCGUccu -5'
18995 5' -61.1 NC_004684.1 + 21240 0.69 0.287813
Target:  5'- -gGCGUGGCcGCGAGguguuCGUGCGcCAGGu -3'
miRNA:   3'- caCGCGCCGcCGCUU-----GCACGC-GUCCu -5'
18995 5' -61.1 NC_004684.1 + 33489 0.69 0.287813
Target:  5'- gGUGgaCGCGGCGGCGGcccuguacucGCGgGCGguGGc -3'
miRNA:   3'- -CAC--GCGCCGCCGCU----------UGCaCGCguCCu -5'
18995 5' -61.1 NC_004684.1 + 64542 0.69 0.287813
Target:  5'- -gGCuCGGCGGCcuuggugaccGggUugGUGCGCAGGAu -3'
miRNA:   3'- caCGcGCCGCCG----------CuuG--CACGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 65773 0.69 0.294765
Target:  5'- -cGCGCGcCGGUGGGCGcGCGCAcGGc -3'
miRNA:   3'- caCGCGCcGCCGCUUGCaCGCGU-CCu -5'
18995 5' -61.1 NC_004684.1 + 28728 0.69 0.30906
Target:  5'- -gGCGCGucuGCGGCaccGACGUGCGguGcGAg -3'
miRNA:   3'- caCGCGC---CGCCGc--UUGCACGCguC-CU- -5'
18995 5' -61.1 NC_004684.1 + 65444 0.71 0.230986
Target:  5'- -cGUGCGGCGcGCGGccacCGUGCGCcGGu -3'
miRNA:   3'- caCGCGCCGC-CGCUu---GCACGCGuCCu -5'
18995 5' -61.1 NC_004684.1 + 54346 0.71 0.227555
Target:  5'- -aGCGCGGCGGUGGAgauguuggcaagugcCGgGgGCGGGGu -3'
miRNA:   3'- caCGCGCCGCCGCUU---------------GCaCgCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 10233 0.71 0.225291
Target:  5'- gGUGCGCGaGCaGCuGGcCGUGCGCGuGGAg -3'
miRNA:   3'- -CACGCGC-CGcCG-CUuGCACGCGU-CCU- -5'
18995 5' -61.1 NC_004684.1 + 41697 0.69 0.30906
Target:  5'- -aGCGCGGCGaCG-GCGUGCGguucaaGGGAc -3'
miRNA:   3'- caCGCGCCGCcGCuUGCACGCg-----UCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.