miRNA display CGI


Results 81 - 100 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18995 5' -61.1 NC_004684.1 + 16790 0.67 0.396964
Target:  5'- -gGUGCGGC-GCGu-CGUGUGguGGGc -3'
miRNA:   3'- caCGCGCCGcCGCuuGCACGCguCCU- -5'
18995 5' -61.1 NC_004684.1 + 63588 0.67 0.405714
Target:  5'- cUGCGCGGCgcGGCGGugGUuacCGCcucGGAc -3'
miRNA:   3'- cACGCGCCG--CCGCUugCAc--GCGu--CCU- -5'
18995 5' -61.1 NC_004684.1 + 25643 0.67 0.414585
Target:  5'- uGUGCcguucgagaGCGGCGGCGGuaccGgGCAGGGc -3'
miRNA:   3'- -CACG---------CGCCGCCGCUugcaCgCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 47129 0.67 0.414585
Target:  5'- cGUGCGCcucGGUGGCGuagGCGgccccgGUGCccAGGAg -3'
miRNA:   3'- -CACGCG---CCGCCGCu--UGCa-----CGCG--UCCU- -5'
18995 5' -61.1 NC_004684.1 + 9660 0.67 0.423574
Target:  5'- -cGgGCGGCGGUGAA-GcGCGCGGu- -3'
miRNA:   3'- caCgCGCCGCCGCUUgCaCGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 28579 0.67 0.423574
Target:  5'- gGUGUGCGGCGGCu-GCcUGCcgguCGGGGa -3'
miRNA:   3'- -CACGCGCCGCCGcuUGcACGc---GUCCU- -5'
18995 5' -61.1 NC_004684.1 + 66881 0.67 0.423574
Target:  5'- -aGCGcCGGUGGCGAccuuCG-GCGCGGc- -3'
miRNA:   3'- caCGC-GCCGCCGCUu---GCaCGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 6360 0.67 0.423574
Target:  5'- aUGU-CGGCGGCGAugGccugcgcguUGCGCAGc- -3'
miRNA:   3'- cACGcGCCGCCGCUugC---------ACGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 65546 0.67 0.396964
Target:  5'- -aGCGCGGUGGCGuaccCGUaguaauacCGCAGGu -3'
miRNA:   3'- caCGCGCCGCCGCuu--GCAc-------GCGUCCu -5'
18995 5' -61.1 NC_004684.1 + 35424 0.67 0.388335
Target:  5'- -aGCGCGGgaGGCGAugGUccCGCcGGAc -3'
miRNA:   3'- caCGCGCCg-CCGCUugCAc-GCGuCCU- -5'
18995 5' -61.1 NC_004684.1 + 6420 0.67 0.378987
Target:  5'- -aGCuCGGCGGCGGcgugaacgccuucGCGcuuggccgagGCGCAGGGg -3'
miRNA:   3'- caCGcGCCGCCGCU-------------UGCa---------CGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 45881 0.69 0.323877
Target:  5'- uGUGCGCgccguccacgcuGGCGGCGAAacgauguugGUGCGCucgcGGGc -3'
miRNA:   3'- -CACGCG------------CCGCCGCUUg--------CACGCGu---CCU- -5'
18995 5' -61.1 NC_004684.1 + 12018 0.69 0.323877
Target:  5'- --uCGCGGCGGCGGugGccaagGCcaugcucgaccaGCAGGAg -3'
miRNA:   3'- cacGCGCCGCCGCUugCa----CG------------CGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 46739 0.68 0.329186
Target:  5'- uUGagGCGGCGGUauuguccagcgugcGGACGcaggcgGCGCAGGAa -3'
miRNA:   3'- cACg-CGCCGCCG--------------CUUGCa-----CGCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 59456 0.68 0.339216
Target:  5'- uGUGCGCcggucGGCGGCGAuguccaccACcUGCGCGGc- -3'
miRNA:   3'- -CACGCG-----CCGCCGCU--------UGcACGCGUCcu -5'
18995 5' -61.1 NC_004684.1 + 66529 0.68 0.342347
Target:  5'- -aGCGCGGCccGGCGGGCacggcgguaggcguuGUGCGCcucaccGGAa -3'
miRNA:   3'- caCGCGCCG--CCGCUUG---------------CACGCGu-----CCU- -5'
18995 5' -61.1 NC_004684.1 + 20120 0.68 0.347082
Target:  5'- cUGgGCGGCGGCaccaaGAACGUGCGg---- -3'
miRNA:   3'- cACgCGCCGCCG-----CUUGCACGCguccu -5'
18995 5' -61.1 NC_004684.1 + 59120 0.68 0.347082
Target:  5'- -aGCGCcgcaggucGCGGCGcACGUG-GCGGGAc -3'
miRNA:   3'- caCGCGc-------CGCCGCuUGCACgCGUCCU- -5'
18995 5' -61.1 NC_004684.1 + 6161 0.68 0.355077
Target:  5'- ---gGCGGCGGCcAGCGUGCgGCGGu- -3'
miRNA:   3'- cacgCGCCGCCGcUUGCACG-CGUCcu -5'
18995 5' -61.1 NC_004684.1 + 47193 0.68 0.3632
Target:  5'- -cGCuGC-GCGGCGAACGgugcgGCGguGGu -3'
miRNA:   3'- caCG-CGcCGCCGCUUGCa----CGCguCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.