miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18996 3' -54.8 NC_004684.1 + 57824 0.67 0.749813
Target:  5'- cCUGgucccggCGGUgCUGGCCGcCGGUacccgcccGAUUGCc -3'
miRNA:   3'- -GACa------GCUA-GACCGGCaGCCA--------CUAGCG- -5'
18996 3' -54.8 NC_004684.1 + 43627 0.67 0.739609
Target:  5'- ---aCGGUgUGGCCGagcgCGGUGAguUCGUc -3'
miRNA:   3'- gacaGCUAgACCGGCa---GCCACU--AGCG- -5'
18996 3' -54.8 NC_004684.1 + 50069 0.68 0.729301
Target:  5'- -gGUCGAgCUGcGCC-UUGGUG-UCGCa -3'
miRNA:   3'- gaCAGCUaGAC-CGGcAGCCACuAGCG- -5'
18996 3' -54.8 NC_004684.1 + 31208 0.68 0.718901
Target:  5'- cCUGgaagaCGAcCUGGCCGacgcCGGUGA-CGCc -3'
miRNA:   3'- -GACa----GCUaGACCGGCa---GCCACUaGCG- -5'
18996 3' -54.8 NC_004684.1 + 32813 0.68 0.687248
Target:  5'- -gGUCGAUgUaGGCCGUgCGGUacGUCGUg -3'
miRNA:   3'- gaCAGCUAgA-CCGGCA-GCCAc-UAGCG- -5'
18996 3' -54.8 NC_004684.1 + 61021 0.68 0.687248
Target:  5'- aUGUCGAaCUGGCCGagGcGUGcgaCGCc -3'
miRNA:   3'- gACAGCUaGACCGGCagC-CACua-GCG- -5'
18996 3' -54.8 NC_004684.1 + 52231 0.69 0.622846
Target:  5'- -cGUCGAUCaGGCCGU-GGUGccacaGCg -3'
miRNA:   3'- gaCAGCUAGaCCGGCAgCCACuag--CG- -5'
18996 3' -54.8 NC_004684.1 + 62099 0.69 0.619616
Target:  5'- -cGUCGuagCUGGCgcuggcgaacauggCGUCGGUGAacUCGUu -3'
miRNA:   3'- gaCAGCua-GACCG--------------GCAGCCACU--AGCG- -5'
18996 3' -54.8 NC_004684.1 + 9843 0.7 0.60134
Target:  5'- -cGUCGAUCaccGCCGcCGGUGAgcugcCGCc -3'
miRNA:   3'- gaCAGCUAGac-CGGCaGCCACUa----GCG- -5'
18996 3' -54.8 NC_004684.1 + 16300 0.71 0.548157
Target:  5'- aCUGUCGuAUCagaccgGGCCGcCGGUGAU-GUa -3'
miRNA:   3'- -GACAGC-UAGa-----CCGGCaGCCACUAgCG- -5'
18996 3' -54.8 NC_004684.1 + 12005 0.72 0.486469
Target:  5'- ---aCGGccCUGGCUGUCGGUGGUgcCGCg -3'
miRNA:   3'- gacaGCUa-GACCGGCAGCCACUA--GCG- -5'
18996 3' -54.8 NC_004684.1 + 41445 0.72 0.456872
Target:  5'- -gGUCGAUgaaccggguggcCUuggcccGGCCGUCGGcGGUCGCg -3'
miRNA:   3'- gaCAGCUA------------GA------CCGGCAGCCaCUAGCG- -5'
18996 3' -54.8 NC_004684.1 + 60438 0.75 0.341106
Target:  5'- cCUGgcaccgCUGGCCGaacgcgCGGUGAUCGCg -3'
miRNA:   3'- -GACagcua-GACCGGCa-----GCCACUAGCG- -5'
18996 3' -54.8 NC_004684.1 + 64774 0.78 0.207293
Target:  5'- -cGUCGGUCUGGCUGUCGGcGAa-GCu -3'
miRNA:   3'- gaCAGCUAGACCGGCAGCCaCUagCG- -5'
18996 3' -54.8 NC_004684.1 + 13996 1.11 0.001267
Target:  5'- gCUGUCGAUCUGGCCGUCGGUGAUCGCc -3'
miRNA:   3'- -GACAGCUAGACCGGCAGCCACUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.