Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18996 | 5' | -56.7 | NC_004684.1 | + | 13962 | 1.09 | 0.000929 |
Target: 5'- uCGACACCCUCCUGAAUGGCCAGGUCGg -3' miRNA: 3'- -GCUGUGGGAGGACUUACCGGUCCAGC- -5' |
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18996 | 5' | -56.7 | NC_004684.1 | + | 25066 | 0.74 | 0.257325 |
Target: 5'- gGAUGCCgC-CCUGGgacaccggaagcGUGGCCGGGUCGg -3' miRNA: 3'- gCUGUGG-GaGGACU------------UACCGGUCCAGC- -5' |
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18996 | 5' | -56.7 | NC_004684.1 | + | 50114 | 0.74 | 0.257325 |
Target: 5'- uGGCcCCCaCCUcGAUGGCCAGGUUGa -3' miRNA: 3'- gCUGuGGGaGGAcUUACCGGUCCAGC- -5' |
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18996 | 5' | -56.7 | NC_004684.1 | + | 11888 | 0.74 | 0.277231 |
Target: 5'- -cGCGCCCUUCUccacGGUGGCCuGGUCGg -3' miRNA: 3'- gcUGUGGGAGGAc---UUACCGGuCCAGC- -5' |
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18996 | 5' | -56.7 | NC_004684.1 | + | 6795 | 0.72 | 0.377582 |
Target: 5'- uCGGCuuGCUCgcgCCgacGGUGGCCAGGUCGa -3' miRNA: 3'- -GCUG--UGGGa--GGac-UUACCGGUCCAGC- -5' |
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18996 | 5' | -56.7 | NC_004684.1 | + | 33544 | 0.72 | 0.377582 |
Target: 5'- aCGGCACCgUCCUGuugaGGCgCGGcGUCGa -3' miRNA: 3'- -GCUGUGGgAGGACuua-CCG-GUC-CAGC- -5' |
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18996 | 5' | -56.7 | NC_004684.1 | + | 25174 | 0.71 | 0.403959 |
Target: 5'- cCGACGCCaucuccgaCCUGGuUGGCCAGG-CGc -3' miRNA: 3'- -GCUGUGGga------GGACUuACCGGUCCaGC- -5' |
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18996 | 5' | -56.7 | NC_004684.1 | + | 14882 | 0.71 | 0.403959 |
Target: 5'- cCGGCACCCguccgcagaaCCUGGacaccuucGUGGCCAuGGUCc -3' miRNA: 3'- -GCUGUGGGa---------GGACU--------UACCGGU-CCAGc -5' |
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18996 | 5' | -56.7 | NC_004684.1 | + | 2443 | 0.71 | 0.422178 |
Target: 5'- cCGACaucGCCCgCCUGGGcGGCCAGcUCGg -3' miRNA: 3'- -GCUG---UGGGaGGACUUaCCGGUCcAGC- -5' |
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18996 | 5' | -56.7 | NC_004684.1 | + | 10073 | 0.69 | 0.509783 |
Target: 5'- aCGACACCC-CCguGGUGcGCCGGGUg- -3' miRNA: 3'- -GCUGUGGGaGGacUUAC-CGGUCCAgc -5' |
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18996 | 5' | -56.7 | NC_004684.1 | + | 26403 | 0.69 | 0.524117 |
Target: 5'- uCGGCgGCCCggcggCCUGGccgagcugcguaccgAUGGCCgAGGUCa -3' miRNA: 3'- -GCUG-UGGGa----GGACU---------------UACCGG-UCCAGc -5' |
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18996 | 5' | -56.7 | NC_004684.1 | + | 32075 | 0.68 | 0.550079 |
Target: 5'- gCGACGCaCCgcgUCUGGGugagcguUGGCCAGG-CGg -3' miRNA: 3'- -GCUGUG-GGa--GGACUU-------ACCGGUCCaGC- -5' |
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18996 | 5' | -56.7 | NC_004684.1 | + | 13878 | 0.68 | 0.593434 |
Target: 5'- gCGACACCg-CgCUGGA-GGCgCAGGUUGg -3' miRNA: 3'- -GCUGUGGgaG-GACUUaCCG-GUCCAGC- -5' |
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18996 | 5' | -56.7 | NC_004684.1 | + | 38444 | 0.68 | 0.604108 |
Target: 5'- -cGCGCCCUCgUUGAGcuugGGCguGGUCa -3' miRNA: 3'- gcUGUGGGAG-GACUUa---CCGguCCAGc -5' |
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18996 | 5' | -56.7 | NC_004684.1 | + | 9577 | 0.68 | 0.604108 |
Target: 5'- aCGugGCCgaCCUGAuccGUGGCUGGGa-- -3' miRNA: 3'- -GCugUGGgaGGACU---UACCGGUCCagc -5' |
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18996 | 5' | -56.7 | NC_004684.1 | + | 45963 | 0.67 | 0.614804 |
Target: 5'- aCGGCGgCCUCCaUGAccucGGCCAGuucGUCGu -3' miRNA: 3'- -GCUGUgGGAGG-ACUua--CCGGUC---CAGC- -5' |
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18996 | 5' | -56.7 | NC_004684.1 | + | 506 | 0.67 | 0.636232 |
Target: 5'- aCGACACgCUCCUGGAgcugcugcaaGGCCuGGa-- -3' miRNA: 3'- -GCUGUGgGAGGACUUa---------CCGGuCCagc -5' |
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18996 | 5' | -56.7 | NC_004684.1 | + | 11257 | 0.67 | 0.646945 |
Target: 5'- uGAC-CCaCUCgCUGGc-GGCCAGGUCc -3' miRNA: 3'- gCUGuGG-GAG-GACUuaCCGGUCCAGc -5' |
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18996 | 5' | -56.7 | NC_004684.1 | + | 23649 | 0.67 | 0.646945 |
Target: 5'- uGGCACCgCUgCUGAccggguacaccgAcGGCCuGGUCGg -3' miRNA: 3'- gCUGUGG-GAgGACU------------UaCCGGuCCAGC- -5' |
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18996 | 5' | -56.7 | NC_004684.1 | + | 4717 | 0.66 | 0.678968 |
Target: 5'- gGACuuGCCCUCCUGcggcGGgCAGGUg- -3' miRNA: 3'- gCUG--UGGGAGGACuua-CCgGUCCAgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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