miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18998 5' -53.9 NC_004684.1 + 32462 0.66 0.835399
Target:  5'- cGUCGUGUacccguaggUGUUGGCGUUGaacuggguguccaGCGUGAUc -3'
miRNA:   3'- -CAGCGCA---------ACAGCCGCAACa------------UGCGCUA- -5'
18998 5' -53.9 NC_004684.1 + 6379 0.67 0.792501
Target:  5'- -gCGCGUUGcgCaGCG-UGUugGCGAa -3'
miRNA:   3'- caGCGCAACa-GcCGCaACAugCGCUa -5'
18998 5' -53.9 NC_004684.1 + 63917 0.67 0.772691
Target:  5'- -cCGgGUaa-CGGCGUUGUACGCGc- -3'
miRNA:   3'- caGCgCAacaGCCGCAACAUGCGCua -5'
18998 5' -53.9 NC_004684.1 + 47569 0.67 0.762563
Target:  5'- uGUCGCGcUUGcUCGGCucagUGUGCucgGCGAUg -3'
miRNA:   3'- -CAGCGC-AAC-AGCCGca--ACAUG---CGCUA- -5'
18998 5' -53.9 NC_004684.1 + 63841 0.67 0.752302
Target:  5'- -gCGCGgcgcacgcUGUCGGUGccacGUGCGCGGUg -3'
miRNA:   3'- caGCGCa-------ACAGCCGCaa--CAUGCGCUA- -5'
18998 5' -53.9 NC_004684.1 + 34854 0.68 0.741919
Target:  5'- -cCGUGggcgGUucCGcGCGUUGUGCGCGAc -3'
miRNA:   3'- caGCGCaa--CA--GC-CGCAACAUGCGCUa -5'
18998 5' -53.9 NC_004684.1 + 19950 0.68 0.741919
Target:  5'- -gCGCGUUGUCuGCaccacgGUGCGCGGc -3'
miRNA:   3'- caGCGCAACAGcCGcaa---CAUGCGCUa -5'
18998 5' -53.9 NC_004684.1 + 4835 0.68 0.731425
Target:  5'- gGUCGCGgcacUUG-CGGCuGUggccGUGCGCGAg -3'
miRNA:   3'- -CAGCGC----AACaGCCG-CAa---CAUGCGCUa -5'
18998 5' -53.9 NC_004684.1 + 4504 0.68 0.720832
Target:  5'- -gCGCGUUGUucCGGCGgccaggacUUGcugGCGCGAUa -3'
miRNA:   3'- caGCGCAACA--GCCGC--------AACa--UGCGCUA- -5'
18998 5' -53.9 NC_004684.1 + 26562 0.68 0.710152
Target:  5'- -aCGCGUuccggcgcgcccUGgcgcgCGGCGgUGUGCGCGGg -3'
miRNA:   3'- caGCGCA------------ACa----GCCGCaACAUGCGCUa -5'
18998 5' -53.9 NC_004684.1 + 58527 0.68 0.699396
Target:  5'- -gUGcCGUUGgcggCGGCGUUGgagAUGCGAg -3'
miRNA:   3'- caGC-GCAACa---GCCGCAACa--UGCGCUa -5'
18998 5' -53.9 NC_004684.1 + 42223 0.69 0.684229
Target:  5'- cGUgGUGgcGUCGGCGUUGaacaccaugucgcGCGCGGUg -3'
miRNA:   3'- -CAgCGCaaCAGCCGCAACa------------UGCGCUA- -5'
18998 5' -53.9 NC_004684.1 + 39401 0.69 0.677698
Target:  5'- -cCGCGUcgggUGUCGGCaguUUGaUACGCGAc -3'
miRNA:   3'- caGCGCA----ACAGCCGc--AAC-AUGCGCUa -5'
18998 5' -53.9 NC_004684.1 + 49529 0.69 0.666779
Target:  5'- --aGCGUgcaccCGGCGgUGUGCGCGGUg -3'
miRNA:   3'- cagCGCAaca--GCCGCaACAUGCGCUA- -5'
18998 5' -53.9 NC_004684.1 + 60212 0.69 0.644855
Target:  5'- aUCgGCGUUGgccUCGGCGUUGUAgGUGc- -3'
miRNA:   3'- cAG-CGCAAC---AGCCGCAACAUgCGCua -5'
18998 5' -53.9 NC_004684.1 + 3695 0.69 0.63387
Target:  5'- cUCGUGU--UCGGCGgcccaGUGCGCGAc -3'
miRNA:   3'- cAGCGCAacAGCCGCaa---CAUGCGCUa -5'
18998 5' -53.9 NC_004684.1 + 23771 0.73 0.443973
Target:  5'- -cCGUGggGcgCGGCGUUGgGCGCGAUg -3'
miRNA:   3'- caGCGCaaCa-GCCGCAACaUGCGCUA- -5'
18998 5' -53.9 NC_004684.1 + 65870 0.74 0.405982
Target:  5'- gGUCGCGUcGUCGcCGUUGaGCGCGGc -3'
miRNA:   3'- -CAGCGCAaCAGCcGCAACaUGCGCUa -5'
18998 5' -53.9 NC_004684.1 + 14440 1.06 0.002794
Target:  5'- gGUCGCGUUGUCGGCGUUGUACGCGAUg -3'
miRNA:   3'- -CAGCGCAACAGCCGCAACAUGCGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.