miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19000 3' -57.2 NC_004684.1 + 49418 0.67 0.619773
Target:  5'- aGCGCCGAccauGGCCGcCGACgggUCGa -3'
miRNA:   3'- gCGCGGCUauu-CCGGCaGCUGg--AGUa -5'
19000 3' -57.2 NC_004684.1 + 66985 0.67 0.609046
Target:  5'- cCGCGCCGA--AGGCCG-CG-CCg--- -3'
miRNA:   3'- -GCGCGGCUauUCCGGCaGCuGGagua -5'
19000 3' -57.2 NC_004684.1 + 51898 0.67 0.598339
Target:  5'- gCGCGCgCGGccuGGCCGUgGACCg--- -3'
miRNA:   3'- -GCGCG-GCUauuCCGGCAgCUGGagua -5'
19000 3' -57.2 NC_004684.1 + 2592 0.67 0.598339
Target:  5'- gGCGUCGuUGAGGCCGc---CCUCAUa -3'
miRNA:   3'- gCGCGGCuAUUCCGGCagcuGGAGUA- -5'
19000 3' -57.2 NC_004684.1 + 23101 0.67 0.587658
Target:  5'- uCGCuGCCGAcGGcGGCCaGUCGGCC-CAg -3'
miRNA:   3'- -GCG-CGGCUaUU-CCGG-CAGCUGGaGUa -5'
19000 3' -57.2 NC_004684.1 + 6092 0.67 0.586592
Target:  5'- cCGCGuCCGAUGgugcgccugagccAGGCCGg-GACUUCGc -3'
miRNA:   3'- -GCGC-GGCUAU-------------UCCGGCagCUGGAGUa -5'
19000 3' -57.2 NC_004684.1 + 20502 0.67 0.577013
Target:  5'- uGCGCCagGAgucguccAGGCUGaccUCGGCCUCGUg -3'
miRNA:   3'- gCGCGG--CUau-----UCCGGC---AGCUGGAGUA- -5'
19000 3' -57.2 NC_004684.1 + 66951 0.67 0.577013
Target:  5'- gGCG-CGAUcucgccccaGCCGUCGACCUCGg -3'
miRNA:   3'- gCGCgGCUAuuc------CGGCAGCUGGAGUa -5'
19000 3' -57.2 NC_004684.1 + 28115 0.67 0.577013
Target:  5'- gCGCucuGCCGGUGucacguccAGGCCaUCGACCUgCAUc -3'
miRNA:   3'- -GCG---CGGCUAU--------UCCGGcAGCUGGA-GUA- -5'
19000 3' -57.2 NC_004684.1 + 3035 0.68 0.566411
Target:  5'- gCGCGCCGAU--GGCC-UCgGugCUCGg -3'
miRNA:   3'- -GCGCGGCUAuuCCGGcAG-CugGAGUa -5'
19000 3' -57.2 NC_004684.1 + 65774 0.68 0.566411
Target:  5'- gCGCGCCGGUGGGcGCgCGcacggCGACCg--- -3'
miRNA:   3'- -GCGCGGCUAUUC-CG-GCa----GCUGGagua -5'
19000 3' -57.2 NC_004684.1 + 29344 0.68 0.566411
Target:  5'- aGCGCUGG-GAGGCgGUgGACCUg-- -3'
miRNA:   3'- gCGCGGCUaUUCCGgCAgCUGGAgua -5'
19000 3' -57.2 NC_004684.1 + 5963 0.68 0.566411
Target:  5'- cCGCGCCGGUGAgcgaccGGCCGagcaaguccCGGCCUgGc -3'
miRNA:   3'- -GCGCGGCUAUU------CCGGCa--------GCUGGAgUa -5'
19000 3' -57.2 NC_004684.1 + 13023 0.68 0.566411
Target:  5'- aCGCGcCCGGUuacgucgccGGGCCGgUCGGCUUCc- -3'
miRNA:   3'- -GCGC-GGCUAu--------UCCGGC-AGCUGGAGua -5'
19000 3' -57.2 NC_004684.1 + 64772 0.68 0.566411
Target:  5'- gGCGUCGGUcuGGCUGUCGGCg---- -3'
miRNA:   3'- gCGCGGCUAuuCCGGCAGCUGgagua -5'
19000 3' -57.2 NC_004684.1 + 12888 0.68 0.545367
Target:  5'- gCGCGUCGucggcggGGGuGCCGUUGuCCUCGUu -3'
miRNA:   3'- -GCGCGGCua-----UUC-CGGCAGCuGGAGUA- -5'
19000 3' -57.2 NC_004684.1 + 10756 0.68 0.545367
Target:  5'- gGCGuUCGGUGu-GCCgGUCGACCUCAc -3'
miRNA:   3'- gCGC-GGCUAUucCGG-CAGCUGGAGUa -5'
19000 3' -57.2 NC_004684.1 + 60542 0.68 0.545367
Target:  5'- cCGCGcCCGGU---GCCGUCGAcacCCUCGa -3'
miRNA:   3'- -GCGC-GGCUAuucCGGCAGCU---GGAGUa -5'
19000 3' -57.2 NC_004684.1 + 15203 0.68 0.534938
Target:  5'- aGCGucCCGGUGAcGGCaagGUCGGCCUCc- -3'
miRNA:   3'- gCGC--GGCUAUU-CCGg--CAGCUGGAGua -5'
19000 3' -57.2 NC_004684.1 + 58102 0.68 0.525613
Target:  5'- gCGCGCCGAgcauGGCCGgguccgcgaacaacgCGACCg--- -3'
miRNA:   3'- -GCGCGGCUauu-CCGGCa--------------GCUGGagua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.