miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19001 3' -63.1 NC_004684.1 + 48975 0.66 0.392207
Target:  5'- cCGGggCgGGCGCg-UCGGUGCCCugcuGGCCg -3'
miRNA:   3'- -GCCuaG-UCGCGgaGGUCGCGGG----CCGG- -5'
19001 3' -63.1 NC_004684.1 + 58328 0.66 0.392207
Target:  5'- cCGGGUCAugGCGCgC-CCGGUGgCCCuGCUg -3'
miRNA:   3'- -GCCUAGU--CGCG-GaGGUCGC-GGGcCGG- -5'
19001 3' -63.1 NC_004684.1 + 37743 0.66 0.392207
Target:  5'- cCGGGUCgaugccugaccgGGCgGCCauggCCAGCGCaccgaCGGCg -3'
miRNA:   3'- -GCCUAG------------UCG-CGGa---GGUCGCGg----GCCGg -5'
19001 3' -63.1 NC_004684.1 + 40376 0.66 0.391361
Target:  5'- gGGGccUCGGCgguggcgGCCUUCGGCaGgCCGGUCa -3'
miRNA:   3'- gCCU--AGUCG-------CGGAGGUCG-CgGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 36246 0.66 0.391361
Target:  5'- uGGcgUGGCcaagagcuaugagGUgUCCGGCgGCCUGGCCa -3'
miRNA:   3'- gCCuaGUCG-------------CGgAGGUCG-CGGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 27476 0.66 0.383807
Target:  5'- uCGGGUUgAGCacGCgCUCCGGCGCgauggUGGCCu -3'
miRNA:   3'- -GCCUAG-UCG--CG-GAGGUCGCGg----GCCGG- -5'
19001 3' -63.1 NC_004684.1 + 23867 0.66 0.383807
Target:  5'- -cGAUCAucGCGCCcaacgCC-GCGCCCcacGGCCc -3'
miRNA:   3'- gcCUAGU--CGCGGa----GGuCGCGGG---CCGG- -5'
19001 3' -63.1 NC_004684.1 + 64872 0.66 0.383807
Target:  5'- gCGuGGUCAGCuucGCCgacagCCAGaccgaCGCCUGGCa -3'
miRNA:   3'- -GC-CUAGUCG---CGGa----GGUC-----GCGGGCCGg -5'
19001 3' -63.1 NC_004684.1 + 40481 0.66 0.383807
Target:  5'- uCGGcgGUCuGCGCCgagugcgCCAGCaCCUGGUUg -3'
miRNA:   3'- -GCC--UAGuCGCGGa------GGUCGcGGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 7824 0.66 0.378825
Target:  5'- gCGGcgCGGCgauaccgaucaggugGCUcacggCCAGCGCCaCGGCg -3'
miRNA:   3'- -GCCuaGUCG---------------CGGa----GGUCGCGG-GCCGg -5'
19001 3' -63.1 NC_004684.1 + 55309 0.66 0.378825
Target:  5'- uGGcgcgCGGUGCCaacgccucguaggcaUCCAGCGCCgCcGCCa -3'
miRNA:   3'- gCCua--GUCGCGG---------------AGGUCGCGG-GcCGG- -5'
19001 3' -63.1 NC_004684.1 + 56033 0.66 0.375527
Target:  5'- gCGGcGUCGGCGUCggCCucGC-CCCGGUCc -3'
miRNA:   3'- -GCC-UAGUCGCGGa-GGu-CGcGGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 10793 0.66 0.375527
Target:  5'- aCGGcGUCGGCaCCguagcggcaUCCGGCgGCUgGGCCg -3'
miRNA:   3'- -GCC-UAGUCGcGG---------AGGUCG-CGGgCCGG- -5'
19001 3' -63.1 NC_004684.1 + 33725 0.66 0.375527
Target:  5'- gGGGUCgcugacgagguAGcCGCCcgacgaUCCGGCgcuGCCUGGCCc -3'
miRNA:   3'- gCCUAG-----------UC-GCGG------AGGUCG---CGGGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 13789 0.66 0.375527
Target:  5'- ----cCuGCGCCUCCAGCgcggugucGCCCGcaacGCCa -3'
miRNA:   3'- gccuaGuCGCGGAGGUCG--------CGGGC----CGG- -5'
19001 3' -63.1 NC_004684.1 + 66266 0.66 0.375527
Target:  5'- -aGcgCGGCGUCgucCCAGCGgaCGGCCa -3'
miRNA:   3'- gcCuaGUCGCGGa--GGUCGCggGCCGG- -5'
19001 3' -63.1 NC_004684.1 + 3819 0.66 0.375527
Target:  5'- aGGAUCugcugGGCGCgUUCGGCGUgCCGaCCg -3'
miRNA:   3'- gCCUAG-----UCGCGgAGGUCGCG-GGCcGG- -5'
19001 3' -63.1 NC_004684.1 + 20858 0.66 0.375527
Target:  5'- gGGGcCAcCGCCUCCGGUGUggaCGGCa -3'
miRNA:   3'- gCCUaGUcGCGGAGGUCGCGg--GCCGg -5'
19001 3' -63.1 NC_004684.1 + 1086 0.66 0.375527
Target:  5'- aCGuGAUCGGUGaCCaggCC-GCGaCCCGGCg -3'
miRNA:   3'- -GC-CUAGUCGC-GGa--GGuCGC-GGGCCGg -5'
19001 3' -63.1 NC_004684.1 + 13794 0.66 0.374706
Target:  5'- uGGGUCGGgaUGaUCUUCGGCGUgcccgaaCCGGCCa -3'
miRNA:   3'- gCCUAGUC--GC-GGAGGUCGCG-------GGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.