miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19002 3' -59.6 NC_004684.1 + 16475 0.66 0.518907
Target:  5'- aCCUguGGGCagGCGGUGUuguuUACaGCACc -3'
miRNA:   3'- -GGGguCCUGa-CGCCGCGu---AUGcCGUG- -5'
19002 3' -59.6 NC_004684.1 + 43442 0.66 0.518907
Target:  5'- gCCgAGGucGgUGCGGCGgGcGCGGCAg -3'
miRNA:   3'- gGGgUCC--UgACGCCGCgUaUGCCGUg -5'
19002 3' -59.6 NC_004684.1 + 49315 0.66 0.518907
Target:  5'- gUCCAGGAUcgacccgucgGCGGC-CAUGguCGGCGCu -3'
miRNA:   3'- gGGGUCCUGa---------CGCCGcGUAU--GCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 45142 0.66 0.518907
Target:  5'- aCCCAGGcCU-CGGCGaagucgACGGCGu -3'
miRNA:   3'- gGGGUCCuGAcGCCGCgua---UGCCGUg -5'
19002 3' -59.6 NC_004684.1 + 12557 0.66 0.508841
Target:  5'- gCUCCAGGcGCUcGCacgucaGGCGCAgGCGGCu- -3'
miRNA:   3'- -GGGGUCC-UGA-CG------CCGCGUaUGCCGug -5'
19002 3' -59.6 NC_004684.1 + 1098 0.66 0.508841
Target:  5'- -aCCAGGccGCgaccCGGCGCAacUGGCACg -3'
miRNA:   3'- ggGGUCC--UGac--GCCGCGUauGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 51608 0.66 0.508841
Target:  5'- uCUCCAGGugUuccuugGCcGCGCu--CGGCGCa -3'
miRNA:   3'- -GGGGUCCugA------CGcCGCGuauGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 16786 0.66 0.508841
Target:  5'- -aCCAGG--UGCGGCGCGUcguguggugGGCGCg -3'
miRNA:   3'- ggGGUCCugACGCCGCGUAug-------CCGUG- -5'
19002 3' -59.6 NC_004684.1 + 58665 0.67 0.498858
Target:  5'- -aCgAGGcGCUGCGGCGCA-AgGGCuACa -3'
miRNA:   3'- ggGgUCC-UGACGCCGCGUaUgCCG-UG- -5'
19002 3' -59.6 NC_004684.1 + 47940 0.67 0.498858
Target:  5'- uUCCAGGcCUugGUGGCGU---CGGCACg -3'
miRNA:   3'- gGGGUCCuGA--CGCCGCGuauGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 4213 0.67 0.498858
Target:  5'- aCCgCCAGccacGACUGCauGCGCcugcGCGGCGCg -3'
miRNA:   3'- -GG-GGUC----CUGACGc-CGCGua--UGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 22884 0.67 0.488964
Target:  5'- aUUCGGGAgCUGCuGCGCGU-CGGUGCc -3'
miRNA:   3'- gGGGUCCU-GACGcCGCGUAuGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 14165 0.67 0.488964
Target:  5'- cCCCCAGGucgaucacguuCUGCauGGCGCGgaaccaGGUACc -3'
miRNA:   3'- -GGGGUCCu----------GACG--CCGCGUaug---CCGUG- -5'
19002 3' -59.6 NC_004684.1 + 55800 0.67 0.479162
Target:  5'- -aCCGGGugguccgGUGaGCGCGUGCGaGCACg -3'
miRNA:   3'- ggGGUCCuga----CGC-CGCGUAUGC-CGUG- -5'
19002 3' -59.6 NC_004684.1 + 44245 0.67 0.479162
Target:  5'- gCUCCAGcguGACcaUGGCGCAgucgacgGCGGCACa -3'
miRNA:   3'- -GGGGUC---CUGacGCCGCGUa------UGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 24507 0.67 0.479162
Target:  5'- gCCgCAGGGCcgcgcguucgGCGGUGCcaucUACGGCGg -3'
miRNA:   3'- -GGgGUCCUGa---------CGCCGCGu---AUGCCGUg -5'
19002 3' -59.6 NC_004684.1 + 5894 0.67 0.469458
Target:  5'- aCCgGGuGGCgGCGGCGCugauCGcGCACg -3'
miRNA:   3'- gGGgUC-CUGaCGCCGCGuau-GC-CGUG- -5'
19002 3' -59.6 NC_004684.1 + 47182 0.67 0.459856
Target:  5'- -gCCAGGGCcgccgcugcGCGGCGaacgGUGCGGCGg -3'
miRNA:   3'- ggGGUCCUGa--------CGCCGCg---UAUGCCGUg -5'
19002 3' -59.6 NC_004684.1 + 2083 0.67 0.459856
Target:  5'- gCgCCAGcucgcaACUgGUGGCGCAgcacUACGGCGCg -3'
miRNA:   3'- -GgGGUCc-----UGA-CGCCGCGU----AUGCCGUG- -5'
19002 3' -59.6 NC_004684.1 + 15256 0.67 0.459856
Target:  5'- gUCCCAGGuGCgugGCGGCG---GCGGC-Ca -3'
miRNA:   3'- -GGGGUCC-UGa--CGCCGCguaUGCCGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.