miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19002 5' -52.5 NC_004684.1 + 36889 0.66 0.881822
Target:  5'- gGGUGUcGUAGcUGACcgaGCCGCC-GCCg -3'
miRNA:   3'- gCCACGaCAUUuGUUG---UGGCGGaCGG- -5'
19002 5' -52.5 NC_004684.1 + 54323 0.66 0.881822
Target:  5'- gCGGUGCccugGAACAGCugcugGCCGaCCUcgGCCc -3'
miRNA:   3'- -GCCACGaca-UUUGUUG-----UGGC-GGA--CGG- -5'
19002 5' -52.5 NC_004684.1 + 15881 0.66 0.881822
Target:  5'- uGGUGgUGUGcACGuugccgguguCGCCGCCgcgauaggUGCCg -3'
miRNA:   3'- gCCACgACAUuUGUu---------GUGGCGG--------ACGG- -5'
19002 5' -52.5 NC_004684.1 + 5701 0.66 0.881061
Target:  5'- cCGGUGgaGc-AGCGcgcccucGCGCCGCagaUGCCg -3'
miRNA:   3'- -GCCACgaCauUUGU-------UGUGGCGg--ACGG- -5'
19002 5' -52.5 NC_004684.1 + 14905 0.66 0.878763
Target:  5'- aCGGcGCgccccacaguccgGUGGACAgcGCGCCGCCguaguugugcGCCa -3'
miRNA:   3'- -GCCaCGa------------CAUUUGU--UGUGGCGGa---------CGG- -5'
19002 5' -52.5 NC_004684.1 + 4393 0.66 0.877217
Target:  5'- cCGGUGCaccgcgucccacucgUGU-GGCAGCACCagGCCcuUGCUg -3'
miRNA:   3'- -GCCACG---------------ACAuUUGUUGUGG--CGG--ACGG- -5'
19002 5' -52.5 NC_004684.1 + 29230 0.66 0.877217
Target:  5'- aGGacaUGCUGUGGcGCGGCcccauucaaggcaucACCGCCgaccGCCg -3'
miRNA:   3'- gCC---ACGACAUU-UGUUG---------------UGGCGGa---CGG- -5'
19002 5' -52.5 NC_004684.1 + 62292 0.66 0.874096
Target:  5'- aGGcGCUGcuc-CAGCGCCGCgCggGCCu -3'
miRNA:   3'- gCCaCGACauuuGUUGUGGCG-Ga-CGG- -5'
19002 5' -52.5 NC_004684.1 + 26964 0.66 0.874096
Target:  5'- ---gGCgGUGGcCAACGCCGCCauccagGCCg -3'
miRNA:   3'- gccaCGaCAUUuGUUGUGGCGGa-----CGG- -5'
19002 5' -52.5 NC_004684.1 + 49775 0.66 0.874096
Target:  5'- cCGGUGCccUGGACAccguUAUCGCCgaauggGCCg -3'
miRNA:   3'- -GCCACGacAUUUGUu---GUGGCGGa-----CGG- -5'
19002 5' -52.5 NC_004684.1 + 57927 0.66 0.874096
Target:  5'- uCGG-GCggGUAccGGCGgccaGCACCGCCgggaccagGCCg -3'
miRNA:   3'- -GCCaCGa-CAU--UUGU----UGUGGCGGa-------CGG- -5'
19002 5' -52.5 NC_004684.1 + 39178 0.66 0.874096
Target:  5'- gGGUGC-GUAGGCAcCACCgGCCU-UCa -3'
miRNA:   3'- gCCACGaCAUUUGUuGUGG-CGGAcGG- -5'
19002 5' -52.5 NC_004684.1 + 25319 0.66 0.874096
Target:  5'- gCGGUGUUGUucGCGu--CCaGCgUGCCg -3'
miRNA:   3'- -GCCACGACAuuUGUuguGG-CGgACGG- -5'
19002 5' -52.5 NC_004684.1 + 61066 0.66 0.873309
Target:  5'- aCGG-GCcgGUGGcggcauugucuccGCAACGCCGCCaccgGUCg -3'
miRNA:   3'- -GCCaCGa-CAUU-------------UGUUGUGGCGGa---CGG- -5'
19002 5' -52.5 NC_004684.1 + 30982 0.66 0.873309
Target:  5'- uCGGUGuCUucuucgccgagccGUcgucAAACcacACAUCGCCUGCCg -3'
miRNA:   3'- -GCCAC-GA-------------CA----UUUGu--UGUGGCGGACGG- -5'
19002 5' -52.5 NC_004684.1 + 856 0.67 0.866116
Target:  5'- aCGGUGCcucggcgGUGuccAGgAGCGCCGCCaggGCg -3'
miRNA:   3'- -GCCACGa------CAU---UUgUUGUGGCGGa--CGg -5'
19002 5' -52.5 NC_004684.1 + 61532 0.67 0.866116
Target:  5'- cCGGcgGCg--AGACAAUGCCGCCggUGUCc -3'
miRNA:   3'- -GCCa-CGacaUUUGUUGUGGCGG--ACGG- -5'
19002 5' -52.5 NC_004684.1 + 58264 0.67 0.866116
Target:  5'- aGGUGCUGguggcGGCAcagucGCACCGgCUccccggugaucGCCa -3'
miRNA:   3'- gCCACGACau---UUGU-----UGUGGCgGA-----------CGG- -5'
19002 5' -52.5 NC_004684.1 + 10386 0.67 0.866116
Target:  5'- uCGGUGCgGgcGaccucuggcGCGACACCGgCgucgcugGCCa -3'
miRNA:   3'- -GCCACGaCauU---------UGUUGUGGCgGa------CGG- -5'
19002 5' -52.5 NC_004684.1 + 12178 0.67 0.866116
Target:  5'- gGGUGCcGUAAGaa--AUCGgCUGCCa -3'
miRNA:   3'- gCCACGaCAUUUguugUGGCgGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.