miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19003 5' -52.6 NC_004684.1 + 39238 0.67 0.825956
Target:  5'- uUGCGCgccGAcggguccaagGACUUgcuUGgACCACGCCGg -3'
miRNA:   3'- -ACGCGaa-CU----------UUGAG---ACgUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 9546 0.67 0.825956
Target:  5'- gUGCGCcggUUGGAGCcggUGCGCCGCgaacacgugGCCGa -3'
miRNA:   3'- -ACGCG---AACUUUGag-ACGUGGUG---------UGGC- -5'
19003 5' -52.6 NC_004684.1 + 51550 0.67 0.825956
Target:  5'- aGCacCUUGucGCUCUGCGCCagugcGCGCUGc -3'
miRNA:   3'- aCGc-GAACuuUGAGACGUGG-----UGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 23794 0.67 0.816625
Target:  5'- cGCGCcgccgcccaggUUGGAggccacGCUCUGguCCGgGCCGa -3'
miRNA:   3'- aCGCG-----------AACUU------UGAGACguGGUgUGGC- -5'
19003 5' -52.6 NC_004684.1 + 62293 0.67 0.816625
Target:  5'- gGCGCU----GCUCcaGCGCCGCGCgGg -3'
miRNA:   3'- aCGCGAacuuUGAGa-CGUGGUGUGgC- -5'
19003 5' -52.6 NC_004684.1 + 63484 0.67 0.816625
Target:  5'- gGCGC--GAGGCcuccagCUGCGCCuGCGCCa -3'
miRNA:   3'- aCGCGaaCUUUGa-----GACGUGG-UGUGGc -5'
19003 5' -52.6 NC_004684.1 + 66717 0.67 0.81093
Target:  5'- cUGCGCggcGAACUCggugacggucuugcGCACCAC-CCGg -3'
miRNA:   3'- -ACGCGaacUUUGAGa-------------CGUGGUGuGGC- -5'
19003 5' -52.6 NC_004684.1 + 28384 0.68 0.797376
Target:  5'- aUGCGCg----GCUCcugcgugaGCACCACGCCa -3'
miRNA:   3'- -ACGCGaacuuUGAGa-------CGUGGUGUGGc -5'
19003 5' -52.6 NC_004684.1 + 55824 0.68 0.78748
Target:  5'- gGUGCaacggGGAGCgcaUCUGCGCCAaacguCGCCGg -3'
miRNA:   3'- aCGCGaa---CUUUG---AGACGUGGU-----GUGGC- -5'
19003 5' -52.6 NC_004684.1 + 59956 0.68 0.78748
Target:  5'- uUGUGCUggcGgcGCUC-GUGCCGCACCc -3'
miRNA:   3'- -ACGCGAa--CuuUGAGaCGUGGUGUGGc -5'
19003 5' -52.6 NC_004684.1 + 46659 0.68 0.78748
Target:  5'- aGCGCgacUGGGAaUCcgGCACCaagcGCACCGg -3'
miRNA:   3'- aCGCGa--ACUUUgAGa-CGUGG----UGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 25145 0.68 0.786481
Target:  5'- gUGCGCgc-GAACUucuggagCUGCGCCACGUCGa -3'
miRNA:   3'- -ACGCGaacUUUGA-------GACGUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 33191 0.68 0.78548
Target:  5'- aGCGCgagcgccuGCgUCggcaGCGCCACGCCGg -3'
miRNA:   3'- aCGCGaacuu---UG-AGa---CGUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 18470 0.68 0.777418
Target:  5'- cGUGCccUGGAACuugccggugaugUCgagcgGCACCGCGCCGc -3'
miRNA:   3'- aCGCGa-ACUUUG------------AGa----CGUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 17512 0.68 0.777418
Target:  5'- cUGCGC---GAGCgcgGUGCCACGCCGg -3'
miRNA:   3'- -ACGCGaacUUUGagaCGUGGUGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 57312 0.68 0.767201
Target:  5'- gGCGUUUGuccggcAGGCUgaGCACCaucGCGCCGc -3'
miRNA:   3'- aCGCGAAC------UUUGAgaCGUGG---UGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 63940 0.68 0.767201
Target:  5'- cGCGCgcacgUGGcaccGACagCgUGCGCCGCGCCa -3'
miRNA:   3'- aCGCGa----ACU----UUGa-G-ACGUGGUGUGGc -5'
19003 5' -52.6 NC_004684.1 + 49723 0.68 0.756842
Target:  5'- gGUGCUccUGGAGCcgCUGgGCUggACACCGg -3'
miRNA:   3'- aCGCGA--ACUUUGa-GACgUGG--UGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 5863 0.68 0.756842
Target:  5'- gGCGCagu-AGCgcgCUGCGCCcCACCGc -3'
miRNA:   3'- aCGCGaacuUUGa--GACGUGGuGUGGC- -5'
19003 5' -52.6 NC_004684.1 + 50888 0.68 0.756842
Target:  5'- aGCGCgac-GACUUcaUGUugCGCACCGa -3'
miRNA:   3'- aCGCGaacuUUGAG--ACGugGUGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.