miRNA display CGI


Results 41 - 60 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19004 3' -57 NC_004684.1 + 59663 0.67 0.624355
Target:  5'- -gCGCGCC--AGUCGCgCAUUGACCc- -3'
miRNA:   3'- cgGUGCGGcaUCAGCG-GUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 67250 0.67 0.656375
Target:  5'- aCCAUGCCGUAcaucGcCGCCA-CGAUCaUCg -3'
miRNA:   3'- cGGUGCGGCAU----CaGCGGUaGCUGG-AG- -5'
19004 3' -57 NC_004684.1 + 49737 0.67 0.656375
Target:  5'- uCCACGCCGUGGUCggugcuccuggaGCCGcUgGGCUg- -3'
miRNA:   3'- cGGUGCGGCAUCAG------------CGGU-AgCUGGag -5'
19004 3' -57 NC_004684.1 + 9378 0.67 0.645711
Target:  5'- cGCCAcCGUCGgcGUCGggaacucgaCAUCGGCCa- -3'
miRNA:   3'- -CGGU-GCGGCauCAGCg--------GUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 939 0.67 0.635034
Target:  5'- cGUCGCguaGCUGUAGcaCGCCGUUGAUCUg -3'
miRNA:   3'- -CGGUG---CGGCAUCa-GCGGUAGCUGGAg -5'
19004 3' -57 NC_004684.1 + 46345 0.67 0.613683
Target:  5'- -aCACGaugggagCGUGGUgGUCGUCGugCUCg -3'
miRNA:   3'- cgGUGCg------GCAUCAgCGGUAGCugGAG- -5'
19004 3' -57 NC_004684.1 + 5082 0.67 0.635034
Target:  5'- aCCuuCGCCcgGUAcGUCGCggaGUCGGCCUCc -3'
miRNA:   3'- cGGu-GCGG--CAU-CAGCGg--UAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 4745 0.67 0.613683
Target:  5'- gGCCACaGCCGcaAGU-GCCG-CGACCUg -3'
miRNA:   3'- -CGGUG-CGGCa-UCAgCGGUaGCUGGAg -5'
19004 3' -57 NC_004684.1 + 15453 0.67 0.613683
Target:  5'- uGCC-CGCagGUA-UCGCCGUCGAaCUCg -3'
miRNA:   3'- -CGGuGCGg-CAUcAGCGGUAGCUgGAG- -5'
19004 3' -57 NC_004684.1 + 18902 0.67 0.613683
Target:  5'- uCCACGUCGgcggGGUCGCggcgCAUCaGACCa- -3'
miRNA:   3'- cGGUGCGGCa---UCAGCG----GUAG-CUGGag -5'
19004 3' -57 NC_004684.1 + 66864 0.67 0.613683
Target:  5'- cGCCugGCCagcacGUcAG-CGCCGguggCGACCUUc -3'
miRNA:   3'- -CGGugCGG-----CA-UCaGCGGUa---GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 34647 0.67 0.635034
Target:  5'- cGCCAgCGCgcucuCGUAGcUgGCCAU-GGCCUCg -3'
miRNA:   3'- -CGGU-GCG-----GCAUC-AgCGGUAgCUGGAG- -5'
19004 3' -57 NC_004684.1 + 40657 0.67 0.624355
Target:  5'- gGCCugGCCccgccAGUCGCgcUCGGCCa- -3'
miRNA:   3'- -CGGugCGGca---UCAGCGguAGCUGGag -5'
19004 3' -57 NC_004684.1 + 40807 0.67 0.656375
Target:  5'- cGCCGCGCU--GGUCGUCc-CGGCCa- -3'
miRNA:   3'- -CGGUGCGGcaUCAGCGGuaGCUGGag -5'
19004 3' -57 NC_004684.1 + 8627 0.68 0.558614
Target:  5'- aCCACGCCGUugccgaucaGCCG-CGACUUCu -3'
miRNA:   3'- cGGUGCGGCAucag-----CGGUaGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 67116 0.68 0.539848
Target:  5'- uGCCAggugUGCaCGaAGgccUCGCCGUCGGCCUg -3'
miRNA:   3'- -CGGU----GCG-GCaUC---AGCGGUAGCUGGAg -5'
19004 3' -57 NC_004684.1 + 33301 0.68 0.550249
Target:  5'- uGCuCGCGCgGgUGGccUCGCUgaucauGUCGACCUCg -3'
miRNA:   3'- -CG-GUGCGgC-AUC--AGCGG------UAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 65003 0.68 0.550249
Target:  5'- cGCCAgCGgCGUuggugguGUgGCCAUaggCGACCUCg -3'
miRNA:   3'- -CGGU-GCgGCAu------CAgCGGUA---GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 61815 0.68 0.570173
Target:  5'- uGCCucaGCCGUGGUCggaggugGCCGgggccCGGCCUg -3'
miRNA:   3'- -CGGug-CGGCAUCAG-------CGGUa----GCUGGAg -5'
19004 3' -57 NC_004684.1 + 41990 0.68 0.560711
Target:  5'- cCCGCGCgGUGGcCGCUggCGAcaaCCUCc -3'
miRNA:   3'- cGGUGCGgCAUCaGCGGuaGCU---GGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.