Results 61 - 80 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19004 | 3' | -57 | NC_004684.1 | + | 54954 | 0.68 | 0.589208 |
Target: 5'- gGCCACGaCCGUggcagcaaacgccuGGUugcUGCCAgCGugCUCg -3' miRNA: 3'- -CGGUGC-GGCA--------------UCA---GCGGUaGCugGAG- -5' |
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19004 | 3' | -57 | NC_004684.1 | + | 62723 | 0.68 | 0.590269 |
Target: 5'- gGCCuACGCCGccuucgugcgcGUCGCCAgcaagCG-CCUCg -3' miRNA: 3'- -CGG-UGCGGCau---------CAGCGGUa----GCuGGAG- -5' |
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19004 | 3' | -57 | NC_004684.1 | + | 47991 | 0.68 | 0.571227 |
Target: 5'- gGCCGcCGaCCGUGGccugCGCUA-CGACCUg -3' miRNA: 3'- -CGGU-GC-GGCAUCa---GCGGUaGCUGGAg -5' |
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19004 | 3' | -57 | NC_004684.1 | + | 36529 | 0.68 | 0.539848 |
Target: 5'- gGUCACGCCagcagGGUCGUCGUCcACCa- -3' miRNA: 3'- -CGGUGCGGca---UCAGCGGUAGcUGGag -5' |
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19004 | 3' | -57 | NC_004684.1 | + | 41023 | 0.68 | 0.557567 |
Target: 5'- aGCgGCGUgcccggaaucgucgCGUAGUCGCaAUCGGCCa- -3' miRNA: 3'- -CGgUGCG--------------GCAUCAGCGgUAGCUGGag -5' |
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19004 | 3' | -57 | NC_004684.1 | + | 46681 | 0.68 | 0.539848 |
Target: 5'- aCCGcCGCCGUcGcCGCCGUCGAgCg- -3' miRNA: 3'- cGGU-GCGGCAuCaGCGGUAGCUgGag -5' |
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19004 | 3' | -57 | NC_004684.1 | + | 25911 | 0.68 | 0.571227 |
Target: 5'- cGCCgAUGCCGUucuGGcCGCCAccCGGCCa- -3' miRNA: 3'- -CGG-UGCGGCA---UCaGCGGUa-GCUGGag -5' |
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19004 | 3' | -57 | NC_004684.1 | + | 60885 | 0.68 | 0.571227 |
Target: 5'- cGCCACGCacCGaggcgaguuccUGGUCGCCAUCuucaaguccuGACCa- -3' miRNA: 3'- -CGGUGCG--GC-----------AUCAGCGGUAG----------CUGGag -5' |
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19004 | 3' | -57 | NC_004684.1 | + | 65003 | 0.68 | 0.550249 |
Target: 5'- cGCCAgCGgCGUuggugguGUgGCCAUaggCGACCUCg -3' miRNA: 3'- -CGGU-GCgGCAu------CAgCGGUA---GCUGGAG- -5' |
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19004 | 3' | -57 | NC_004684.1 | + | 41990 | 0.68 | 0.560711 |
Target: 5'- cCCGCGCgGUGGcCGCUggCGAcaaCCUCc -3' miRNA: 3'- cGGUGCGgCAUCaGCGGuaGCU---GGAG- -5' |
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19004 | 3' | -57 | NC_004684.1 | + | 33301 | 0.68 | 0.550249 |
Target: 5'- uGCuCGCGCgGgUGGccUCGCUgaucauGUCGACCUCg -3' miRNA: 3'- -CG-GUGCGgC-AUC--AGCGG------UAGCUGGAG- -5' |
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19004 | 3' | -57 | NC_004684.1 | + | 67116 | 0.68 | 0.539848 |
Target: 5'- uGCCAggugUGCaCGaAGgccUCGCCGUCGGCCUg -3' miRNA: 3'- -CGGU----GCG-GCaUC---AGCGGUAGCUGGAg -5' |
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19004 | 3' | -57 | NC_004684.1 | + | 2352 | 0.68 | 0.592392 |
Target: 5'- uGCCGCccugaguUCGUGGcCGCCAUCGACa-- -3' miRNA: 3'- -CGGUGc------GGCAUCaGCGGUAGCUGgag -5' |
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19004 | 3' | -57 | NC_004684.1 | + | 4111 | 0.68 | 0.596642 |
Target: 5'- cGCCAUGCCGgugaacggcagcaggUGGUgggCGCaCAUCGACUg- -3' miRNA: 3'- -CGGUGCGGC---------------AUCA---GCG-GUAGCUGGag -5' |
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19004 | 3' | -57 | NC_004684.1 | + | 64021 | 0.69 | 0.519254 |
Target: 5'- uGCCGCGCUugaccucgGU-GUCGgCgguGUCGGCCUCg -3' miRNA: 3'- -CGGUGCGG--------CAuCAGCgG---UAGCUGGAG- -5' |
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19004 | 3' | -57 | NC_004684.1 | + | 23003 | 0.69 | 0.519254 |
Target: 5'- gGCCugGgCCGacUGGcCGCCGUCGGCa-- -3' miRNA: 3'- -CGGugC-GGC--AUCaGCGGUAGCUGgag -5' |
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19004 | 3' | -57 | NC_004684.1 | + | 6807 | 0.69 | 0.529514 |
Target: 5'- gGCCACuaCGa---CGCCGUCGGCCUg -3' miRNA: 3'- -CGGUGcgGCaucaGCGGUAGCUGGAg -5' |
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19004 | 3' | -57 | NC_004684.1 | + | 52722 | 0.69 | 0.516191 |
Target: 5'- cGCCACGCuCGUAGgCGCUGUCcuccaggucgucguGGCCg- -3' miRNA: 3'- -CGGUGCG-GCAUCaGCGGUAG--------------CUGGag -5' |
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19004 | 3' | -57 | NC_004684.1 | + | 24422 | 0.69 | 0.509073 |
Target: 5'- cCCAgGCCGaAGUcgaCGCCuUCGugCUCa -3' miRNA: 3'- cGGUgCGGCaUCA---GCGGuAGCugGAG- -5' |
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19004 | 3' | -57 | NC_004684.1 | + | 47606 | 0.69 | 0.519254 |
Target: 5'- gGCCGCacaccGCCGUcGGuacUCGgCGUCGGCCUUg -3' miRNA: 3'- -CGGUG-----CGGCA-UC---AGCgGUAGCUGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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