miRNA display CGI


Results 81 - 100 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19004 3' -57 NC_004684.1 + 64021 0.69 0.519254
Target:  5'- uGCCGCGCUugaccucgGU-GUCGgCgguGUCGGCCUCg -3'
miRNA:   3'- -CGGUGCGG--------CAuCAGCgG---UAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 23003 0.69 0.519254
Target:  5'- gGCCugGgCCGacUGGcCGCCGUCGGCa-- -3'
miRNA:   3'- -CGGugC-GGC--AUCaGCGGUAGCUGgag -5'
19004 3' -57 NC_004684.1 + 52722 0.69 0.516191
Target:  5'- cGCCACGCuCGUAGgCGCUGUCcuccaggucgucguGGCCg- -3'
miRNA:   3'- -CGGUGCG-GCAUCaGCGGUAG--------------CUGGag -5'
19004 3' -57 NC_004684.1 + 24422 0.69 0.509073
Target:  5'- cCCAgGCCGaAGUcgaCGCCuUCGugCUCa -3'
miRNA:   3'- cGGUgCGGCaUCA---GCGGuAGCugGAG- -5'
19004 3' -57 NC_004684.1 + 6807 0.69 0.529514
Target:  5'- gGCCACuaCGa---CGCCGUCGGCCUg -3'
miRNA:   3'- -CGGUGcgGCaucaGCGGUAGCUGGAg -5'
19004 3' -57 NC_004684.1 + 31223 0.69 0.523349
Target:  5'- gGCCgACGCCGgugaCGCCAUugccgauguguucgaCGGCCUCc -3'
miRNA:   3'- -CGG-UGCGGCaucaGCGGUA---------------GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 40518 0.7 0.440454
Target:  5'- cGCgCACGCCcaGGUUGUCGgcgguggCGACCUCc -3'
miRNA:   3'- -CG-GUGCGGcaUCAGCGGUa------GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 7748 0.7 0.469249
Target:  5'- cGCCGCGCCGcuGUCGuCCGaCGACgaCa -3'
miRNA:   3'- -CGGUGCGGCauCAGC-GGUaGCUGgaG- -5'
19004 3' -57 NC_004684.1 + 15737 0.7 0.449942
Target:  5'- gGCCuACcUCGUAGUCGuCCAgcaaccCGGCCUCg -3'
miRNA:   3'- -CGG-UGcGGCAUCAGC-GGUa-----GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 18634 0.7 0.449942
Target:  5'- cGUCGCGUCGUAGUCgauguuGUCggUGACCUUg -3'
miRNA:   3'- -CGGUGCGGCAUCAG------CGGuaGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 20508 0.7 0.479061
Target:  5'- gGCUgauGCGCCaggAGUCGuCCAggcugaccUCGGCCUCg -3'
miRNA:   3'- -CGG---UGCGGca-UCAGC-GGU--------AGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 1220 0.7 0.459542
Target:  5'- cGgCAUGCCGUG---GCCGUCGACCa- -3'
miRNA:   3'- -CgGUGCGGCAUcagCGGUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 31751 0.7 0.431081
Target:  5'- gGCCcuguACGUCGgccuGUaCGCCAUCGACCcCg -3'
miRNA:   3'- -CGG----UGCGGCau--CA-GCGGUAGCUGGaG- -5'
19004 3' -57 NC_004684.1 + 64800 0.71 0.386033
Target:  5'- aCCACGCCGuUGGU-GCUGUCGAgUUCg -3'
miRNA:   3'- cGGUGCGGC-AUCAgCGGUAGCUgGAG- -5'
19004 3' -57 NC_004684.1 + 40101 0.71 0.394792
Target:  5'- gGCCGaucucgugGCCGUAGcgggCGCUggCGGCCUCg -3'
miRNA:   3'- -CGGUg-------CGGCAUCa---GCGGuaGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 37946 0.71 0.421825
Target:  5'- uGCUcgACGCgGUGGagGCCAUCGuCCUg -3'
miRNA:   3'- -CGG--UGCGgCAUCagCGGUAGCuGGAg -5'
19004 3' -57 NC_004684.1 + 10323 0.71 0.386033
Target:  5'- -gCGCGCCGcaacgcaGGcCGCCAUCGACCcCg -3'
miRNA:   3'- cgGUGCGGCa------UCaGCGGUAGCUGGaG- -5'
19004 3' -57 NC_004684.1 + 56920 0.71 0.421825
Target:  5'- aGCUGCGCCagGUGGUCGUgGUCGAUg-- -3'
miRNA:   3'- -CGGUGCGG--CAUCAGCGgUAGCUGgag -5'
19004 3' -57 NC_004684.1 + 34160 0.71 0.41269
Target:  5'- cGCCGCGCCagGGUCGCCggUGugCc- -3'
miRNA:   3'- -CGGUGCGGcaUCAGCGGuaGCugGag -5'
19004 3' -57 NC_004684.1 + 50387 0.71 0.421825
Target:  5'- gGgCACGCgUGaAGUCGCCGUCgGGCCUg -3'
miRNA:   3'- -CgGUGCG-GCaUCAGCGGUAG-CUGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.