miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19004 3' -57 NC_004684.1 + 5693 0.68 0.58179
Target:  5'- uUCACGUaCGUGGUCGCgGUggcgaaGGCCUCc -3'
miRNA:   3'- cGGUGCG-GCAUCAGCGgUAg-----CUGGAG- -5'
19004 3' -57 NC_004684.1 + 60885 0.68 0.571227
Target:  5'- cGCCACGCacCGaggcgaguuccUGGUCGCCAUCuucaaguccuGACCa- -3'
miRNA:   3'- -CGGUGCG--GC-----------AUCAGCGGUAG----------CUGGag -5'
19004 3' -57 NC_004684.1 + 25911 0.68 0.571227
Target:  5'- cGCCgAUGCCGUucuGGcCGCCAccCGGCCa- -3'
miRNA:   3'- -CGG-UGCGGCA---UCaGCGGUa-GCUGGag -5'
19004 3' -57 NC_004684.1 + 28114 0.68 0.571227
Target:  5'- cGCUcUGCCGgugucacGUCcagGCCAUCGACCUg -3'
miRNA:   3'- -CGGuGCGGCau-----CAG---CGGUAGCUGGAg -5'
19004 3' -57 NC_004684.1 + 47991 0.68 0.571227
Target:  5'- gGCCGcCGaCCGUGGccugCGCUA-CGACCUg -3'
miRNA:   3'- -CGGU-GC-GGCAUCa---GCGGUaGCUGGAg -5'
19004 3' -57 NC_004684.1 + 38431 0.68 0.589208
Target:  5'- aGCUugGgCGUGGUCaCCGccuuguccuugagcUUGGCCUCg -3'
miRNA:   3'- -CGGugCgGCAUCAGcGGU--------------AGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 4111 0.68 0.596642
Target:  5'- cGCCAUGCCGgugaacggcagcaggUGGUgggCGCaCAUCGACUg- -3'
miRNA:   3'- -CGGUGCGGC---------------AUCA---GCG-GUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 8627 0.68 0.558614
Target:  5'- aCCACGCCGUugccgaucaGCCG-CGACUUCu -3'
miRNA:   3'- cGGUGCGGCAucag-----CGGUaGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 46681 0.68 0.539848
Target:  5'- aCCGcCGCCGUcGcCGCCGUCGAgCg- -3'
miRNA:   3'- cGGU-GCGGCAuCaGCGGUAGCUgGag -5'
19004 3' -57 NC_004684.1 + 41023 0.68 0.557567
Target:  5'- aGCgGCGUgcccggaaucgucgCGUAGUCGCaAUCGGCCa- -3'
miRNA:   3'- -CGgUGCG--------------GCAUCAGCGgUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 65003 0.68 0.550249
Target:  5'- cGCCAgCGgCGUuggugguGUgGCCAUaggCGACCUCg -3'
miRNA:   3'- -CGGU-GCgGCAu------CAgCGGUA---GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 41990 0.68 0.560711
Target:  5'- cCCGCGCgGUGGcCGCUggCGAcaaCCUCc -3'
miRNA:   3'- cGGUGCGgCAUCaGCGGuaGCU---GGAG- -5'
19004 3' -57 NC_004684.1 + 33301 0.68 0.550249
Target:  5'- uGCuCGCGCgGgUGGccUCGCUgaucauGUCGACCUCg -3'
miRNA:   3'- -CG-GUGCGgC-AUC--AGCGG------UAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 67116 0.68 0.539848
Target:  5'- uGCCAggugUGCaCGaAGgccUCGCCGUCGGCCUg -3'
miRNA:   3'- -CGGU----GCG-GCaUC---AGCGGUAGCUGGAg -5'
19004 3' -57 NC_004684.1 + 11919 0.68 0.539848
Target:  5'- aGUCGCGCC--AGUCGCCGgacagCGGCgcgCUCg -3'
miRNA:   3'- -CGGUGCGGcaUCAGCGGUa----GCUG---GAG- -5'
19004 3' -57 NC_004684.1 + 2352 0.68 0.592392
Target:  5'- uGCCGCccugaguUCGUGGcCGCCAUCGACa-- -3'
miRNA:   3'- -CGGUGc------GGCAUCaGCGGUAGCUGgag -5'
19004 3' -57 NC_004684.1 + 36529 0.68 0.539848
Target:  5'- gGUCACGCCagcagGGUCGUCGUCcACCa- -3'
miRNA:   3'- -CGGUGCGGca---UCAGCGGUAGcUGGag -5'
19004 3' -57 NC_004684.1 + 40289 0.67 0.655309
Target:  5'- aCCGCGCCGUcguuGGUgucgauggcguagCGCCcggcaggcaCGACCUCg -3'
miRNA:   3'- cGGUGCGGCA----UCA-------------GCGGua-------GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 57666 0.67 0.656375
Target:  5'- gGCCugGaCCccacagcaGGUgGCCAUCGGCCa- -3'
miRNA:   3'- -CGGugC-GGca------UCAgCGGUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 39270 0.67 0.645711
Target:  5'- aCCACGCCGguucAG-CGCCucuAUCGACUc- -3'
miRNA:   3'- cGGUGCGGCa---UCaGCGG---UAGCUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.