miRNA display CGI


Results 41 - 60 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19004 3' -57 NC_004684.1 + 18634 0.7 0.449942
Target:  5'- cGUCGCGUCGUAGUCgauguuGUCggUGACCUUg -3'
miRNA:   3'- -CGGUGCGGCAUCAG------CGGuaGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 15737 0.7 0.449942
Target:  5'- gGCCuACcUCGUAGUCGuCCAgcaaccCGGCCUCg -3'
miRNA:   3'- -CGG-UGcGGCAUCAGC-GGUa-----GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 1220 0.7 0.459542
Target:  5'- cGgCAUGCCGUG---GCCGUCGACCa- -3'
miRNA:   3'- -CgGUGCGGCAUcagCGGUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 7748 0.7 0.469249
Target:  5'- cGCCGCGCCGcuGUCGuCCGaCGACgaCa -3'
miRNA:   3'- -CGGUGCGGCauCAGC-GGUaGCUGgaG- -5'
19004 3' -57 NC_004684.1 + 20508 0.7 0.479061
Target:  5'- gGCUgauGCGCCaggAGUCGuCCAggcugaccUCGGCCUCg -3'
miRNA:   3'- -CGG---UGCGGca-UCAGC-GGU--------AGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 1069 0.69 0.486982
Target:  5'- uGCUugGCCGagaacgccccggAGUCGCCAaUGACC-Cg -3'
miRNA:   3'- -CGGugCGGCa-----------UCAGCGGUaGCUGGaG- -5'
19004 3' -57 NC_004684.1 + 2547 0.69 0.498977
Target:  5'- cGgCACGCCGagcUGGcCGCCcaggcgggcgauGUCGGCCUUg -3'
miRNA:   3'- -CgGUGCGGC---AUCaGCGG------------UAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 3480 0.69 0.498977
Target:  5'- aGCCACGCCG-GGcCGCaCcgUGGCCg- -3'
miRNA:   3'- -CGGUGCGGCaUCaGCG-GuaGCUGGag -5'
19004 3' -57 NC_004684.1 + 42641 0.69 0.498977
Target:  5'- gGCCACGCCGaAGccgaaCGCCGUcagcacgcCGACCa- -3'
miRNA:   3'- -CGGUGCGGCaUCa----GCGGUA--------GCUGGag -5'
19004 3' -57 NC_004684.1 + 24422 0.69 0.509073
Target:  5'- cCCAgGCCGaAGUcgaCGCCuUCGugCUCa -3'
miRNA:   3'- cGGUgCGGCaUCA---GCGGuAGCugGAG- -5'
19004 3' -57 NC_004684.1 + 52722 0.69 0.516191
Target:  5'- cGCCACGCuCGUAGgCGCUGUCcuccaggucgucguGGCCg- -3'
miRNA:   3'- -CGGUGCG-GCAUCaGCGGUAG--------------CUGGag -5'
19004 3' -57 NC_004684.1 + 23003 0.69 0.519254
Target:  5'- gGCCugGgCCGacUGGcCGCCGUCGGCa-- -3'
miRNA:   3'- -CGGugC-GGC--AUCaGCGGUAGCUGgag -5'
19004 3' -57 NC_004684.1 + 64021 0.69 0.519254
Target:  5'- uGCCGCGCUugaccucgGU-GUCGgCgguGUCGGCCUCg -3'
miRNA:   3'- -CGGUGCGG--------CAuCAGCgG---UAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 47606 0.69 0.519254
Target:  5'- gGCCGCacaccGCCGUcGGuacUCGgCGUCGGCCUUg -3'
miRNA:   3'- -CGGUG-----CGGCA-UC---AGCgGUAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 31223 0.69 0.523349
Target:  5'- gGCCgACGCCGgugaCGCCAUugccgauguguucgaCGGCCUCc -3'
miRNA:   3'- -CGG-UGCGGCaucaGCGGUA---------------GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 31698 0.69 0.529514
Target:  5'- uCCAUGuuGgcGUCGCCGUCaGGCUg- -3'
miRNA:   3'- cGGUGCggCauCAGCGGUAG-CUGGag -5'
19004 3' -57 NC_004684.1 + 6807 0.69 0.529514
Target:  5'- gGCCACuaCGa---CGCCGUCGGCCUg -3'
miRNA:   3'- -CGGUGcgGCaucaGCGGUAGCUGGAg -5'
19004 3' -57 NC_004684.1 + 67116 0.68 0.539848
Target:  5'- uGCCAggugUGCaCGaAGgccUCGCCGUCGGCCUg -3'
miRNA:   3'- -CGGU----GCG-GCaUC---AGCGGUAGCUGGAg -5'
19004 3' -57 NC_004684.1 + 11919 0.68 0.539848
Target:  5'- aGUCGCGCC--AGUCGCCGgacagCGGCgcgCUCg -3'
miRNA:   3'- -CGGUGCGGcaUCAGCGGUa----GCUG---GAG- -5'
19004 3' -57 NC_004684.1 + 36529 0.68 0.539848
Target:  5'- gGUCACGCCagcagGGUCGUCGUCcACCa- -3'
miRNA:   3'- -CGGUGCGGca---UCAGCGGUAGcUGGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.