miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19004 3' -57 NC_004684.1 + 18902 0.67 0.613683
Target:  5'- uCCACGUCGgcggGGUCGCggcgCAUCaGACCa- -3'
miRNA:   3'- cGGUGCGGCa---UCAGCG----GUAG-CUGGag -5'
19004 3' -57 NC_004684.1 + 19392 0.72 0.352305
Target:  5'- uGUCAuggUGCUGUgggcguucaccGGUCGCCAguUCGGCCUCu -3'
miRNA:   3'- -CGGU---GCGGCA-----------UCAGCGGU--AGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 20508 0.7 0.479061
Target:  5'- gGCUgauGCGCCaggAGUCGuCCAggcugaccUCGGCCUCg -3'
miRNA:   3'- -CGG---UGCGGca-UCAGC-GGU--------AGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 23003 0.69 0.519254
Target:  5'- gGCCugGgCCGacUGGcCGCCGUCGGCa-- -3'
miRNA:   3'- -CGGugC-GGC--AUCaGCGGUAGCUGgag -5'
19004 3' -57 NC_004684.1 + 23549 0.66 0.708142
Target:  5'- cGUCACGCUGUcgggcauGGagGCCAgcagaUCGGCCa- -3'
miRNA:   3'- -CGGUGCGGCA-------UCagCGGU-----AGCUGGag -5'
19004 3' -57 NC_004684.1 + 24422 0.69 0.509073
Target:  5'- cCCAgGCCGaAGUcgaCGCCuUCGugCUCa -3'
miRNA:   3'- cGGUgCGGCaUCA---GCGGuAGCugGAG- -5'
19004 3' -57 NC_004684.1 + 24684 0.72 0.360538
Target:  5'- cGCCACGuCCGcuGUCGUCAggaCGugCUCg -3'
miRNA:   3'- -CGGUGC-GGCauCAGCGGUa--GCugGAG- -5'
19004 3' -57 NC_004684.1 + 25828 0.66 0.709186
Target:  5'- aUCGCGCCGUAcaCaCCGUUGACCg- -3'
miRNA:   3'- cGGUGCGGCAUcaGcGGUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 25911 0.68 0.571227
Target:  5'- cGCCgAUGCCGUucuGGcCGCCAccCGGCCa- -3'
miRNA:   3'- -CGG-UGCGGCA---UCaGCGGUa-GCUGGag -5'
19004 3' -57 NC_004684.1 + 27584 0.73 0.31316
Target:  5'- gGCC-CGCCGUucacuGUaaucgGCCAUgGACCUCa -3'
miRNA:   3'- -CGGuGCGGCAu----CAg----CGGUAgCUGGAG- -5'
19004 3' -57 NC_004684.1 + 28114 0.68 0.571227
Target:  5'- cGCUcUGCCGgugucacGUCcagGCCAUCGACCUg -3'
miRNA:   3'- -CGGuGCGGCau-----CAG---CGGUAGCUGGAg -5'
19004 3' -57 NC_004684.1 + 28894 0.72 0.336241
Target:  5'- cGgCGCGCCGUGGcgacCGCCGcugaUCGACCg- -3'
miRNA:   3'- -CgGUGCGGCAUCa---GCGGU----AGCUGGag -5'
19004 3' -57 NC_004684.1 + 31223 0.69 0.523349
Target:  5'- gGCCgACGCCGgugaCGCCAUugccgauguguucgaCGGCCUCc -3'
miRNA:   3'- -CGG-UGCGGCaucaGCGGUA---------------GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 31698 0.69 0.529514
Target:  5'- uCCAUGuuGgcGUCGCCGUCaGGCUg- -3'
miRNA:   3'- cGGUGCggCauCAGCGGUAG-CUGGag -5'
19004 3' -57 NC_004684.1 + 31751 0.7 0.431081
Target:  5'- gGCCcuguACGUCGgccuGUaCGCCAUCGACCcCg -3'
miRNA:   3'- -CGG----UGCGGCau--CA-GCGGUAGCUGGaG- -5'
19004 3' -57 NC_004684.1 + 32753 0.66 0.677631
Target:  5'- aGCCAUGCCGc---CGCCA--GGCCUUg -3'
miRNA:   3'- -CGGUGCGGCaucaGCGGUagCUGGAG- -5'
19004 3' -57 NC_004684.1 + 33294 0.73 0.31316
Target:  5'- cGCCGgGCUGUccGUCGCCAUggccacggugaCGACCUUg -3'
miRNA:   3'- -CGGUgCGGCAu-CAGCGGUA-----------GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 33301 0.68 0.550249
Target:  5'- uGCuCGCGCgGgUGGccUCGCUgaucauGUCGACCUCg -3'
miRNA:   3'- -CG-GUGCGgC-AUC--AGCGG------UAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 33636 0.66 0.709186
Target:  5'- cGCCGCGCCucaacAGgacggUGCCGUaCGACCcCg -3'
miRNA:   3'- -CGGUGCGGca---UCa----GCGGUA-GCUGGaG- -5'
19004 3' -57 NC_004684.1 + 33687 0.67 0.613683
Target:  5'- uGCCugGCCccacauucauGUAGaacaUCGUgGUCGACCa- -3'
miRNA:   3'- -CGGugCGG----------CAUC----AGCGgUAGCUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.