miRNA display CGI


Results 61 - 80 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19004 3' -57 NC_004684.1 + 34160 0.71 0.41269
Target:  5'- cGCCGCGCCagGGUCGCCggUGugCc- -3'
miRNA:   3'- -CGGUGCGGcaUCAGCGGuaGCugGag -5'
19004 3' -57 NC_004684.1 + 34647 0.67 0.635034
Target:  5'- cGCCAgCGCgcucuCGUAGcUgGCCAU-GGCCUCg -3'
miRNA:   3'- -CGGU-GCG-----GCAUC-AgCGGUAgCUGGAG- -5'
19004 3' -57 NC_004684.1 + 35132 0.66 0.688203
Target:  5'- aGCCA-GCuCGgcucUGCCAUCGACCUg -3'
miRNA:   3'- -CGGUgCG-GCaucaGCGGUAGCUGGAg -5'
19004 3' -57 NC_004684.1 + 36529 0.68 0.539848
Target:  5'- gGUCACGCCagcagGGUCGUCGUCcACCa- -3'
miRNA:   3'- -CGGUGCGGca---UCAGCGGUAGcUGGag -5'
19004 3' -57 NC_004684.1 + 37646 0.66 0.677631
Target:  5'- gGCCAUgGCCGcccGGUCaGgCAUCGACC-Cg -3'
miRNA:   3'- -CGGUG-CGGCa--UCAG-CgGUAGCUGGaG- -5'
19004 3' -57 NC_004684.1 + 37946 0.71 0.421825
Target:  5'- uGCUcgACGCgGUGGagGCCAUCGuCCUg -3'
miRNA:   3'- -CGG--UGCGgCAUCagCGGUAGCuGGAg -5'
19004 3' -57 NC_004684.1 + 38431 0.68 0.589208
Target:  5'- aGCUugGgCGUGGUCaCCGccuuguccuugagcUUGGCCUCg -3'
miRNA:   3'- -CGGugCgGCAUCAGcGGU--------------AGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 39006 0.81 0.094095
Target:  5'- cGUCACGCaCGgcGUCGgUAUCGACCUCu -3'
miRNA:   3'- -CGGUGCG-GCauCAGCgGUAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 39270 0.67 0.645711
Target:  5'- aCCACGCCGguucAG-CGCCucuAUCGACUc- -3'
miRNA:   3'- cGGUGCGGCa---UCaGCGG---UAGCUGGag -5'
19004 3' -57 NC_004684.1 + 40101 0.71 0.394792
Target:  5'- gGCCGaucucgugGCCGUAGcgggCGCUggCGGCCUCg -3'
miRNA:   3'- -CGGUg-------CGGCAUCa---GCGGuaGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 40289 0.67 0.655309
Target:  5'- aCCGCGCCGUcguuGGUgucgauggcguagCGCCcggcaggcaCGACCUCg -3'
miRNA:   3'- cGGUGCGGCA----UCA-------------GCGGua-------GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 40337 0.66 0.698725
Target:  5'- nCgGCGCUGggcaGGUCGCUGgcggCGGCCUUg -3'
miRNA:   3'- cGgUGCGGCa---UCAGCGGUa---GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 40518 0.7 0.440454
Target:  5'- cGCgCACGCCcaGGUUGUCGgcgguggCGACCUCc -3'
miRNA:   3'- -CG-GUGCGGcaUCAGCGGUa------GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 40657 0.67 0.624355
Target:  5'- gGCCugGCCccgccAGUCGCgcUCGGCCa- -3'
miRNA:   3'- -CGGugCGGca---UCAGCGguAGCUGGag -5'
19004 3' -57 NC_004684.1 + 40807 0.67 0.656375
Target:  5'- cGCCGCGCU--GGUCGUCc-CGGCCa- -3'
miRNA:   3'- -CGGUGCGGcaUCAGCGGuaGCUGGag -5'
19004 3' -57 NC_004684.1 + 41023 0.68 0.557567
Target:  5'- aGCgGCGUgcccggaaucgucgCGUAGUCGCaAUCGGCCa- -3'
miRNA:   3'- -CGgUGCG--------------GCAUCAGCGgUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 41486 0.67 0.624355
Target:  5'- aCCGCGaCgGUAGgucgaauaGCCAUCGGCC-Cg -3'
miRNA:   3'- cGGUGC-GgCAUCag------CGGUAGCUGGaG- -5'
19004 3' -57 NC_004684.1 + 41771 0.75 0.232913
Target:  5'- cGCCGCGCUGgguGUUGCCGaggUCGGCC-Cg -3'
miRNA:   3'- -CGGUGCGGCau-CAGCGGU---AGCUGGaG- -5'
19004 3' -57 NC_004684.1 + 41990 0.68 0.560711
Target:  5'- cCCGCGCgGUGGcCGCUggCGAcaaCCUCc -3'
miRNA:   3'- cGGUGCGgCAUCaGCGGuaGCU---GGAG- -5'
19004 3' -57 NC_004684.1 + 41998 0.74 0.284283
Target:  5'- gGCCACGauGUcGUCGCgGUCGGCCa- -3'
miRNA:   3'- -CGGUGCggCAuCAGCGgUAGCUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.