miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19004 3' -57 NC_004684.1 + 60540 0.74 0.257552
Target:  5'- cGCCGCGCCc-GGU-GCCGUCGAcacCCUCg -3'
miRNA:   3'- -CGGUGCGGcaUCAgCGGUAGCU---GGAG- -5'
19004 3' -57 NC_004684.1 + 59663 0.67 0.624355
Target:  5'- -gCGCGCC--AGUCGCgCAUUGACCc- -3'
miRNA:   3'- cgGUGCGGcaUCAGCG-GUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 59561 0.71 0.421825
Target:  5'- gGCCGCGCagGUGGuggacaUCGCCGcCGACCg- -3'
miRNA:   3'- -CGGUGCGg-CAUC------AGCGGUaGCUGGag -5'
19004 3' -57 NC_004684.1 + 58504 0.67 0.635034
Target:  5'- uGCCGCGCCGacugcGGUCcagcguGCCGUUGGCg-- -3'
miRNA:   3'- -CGGUGCGGCa----UCAG------CGGUAGCUGgag -5'
19004 3' -57 NC_004684.1 + 58407 0.66 0.667018
Target:  5'- cGCCAUGacCCGgcGUCGCCggUGAgCUg -3'
miRNA:   3'- -CGGUGC--GGCauCAGCGGuaGCUgGAg -5'
19004 3' -57 NC_004684.1 + 57895 0.66 0.709186
Target:  5'- aCCAgGCCGUGGUCGgguucCCAggucUUGGCC-Ca -3'
miRNA:   3'- cGGUgCGGCAUCAGC-----GGU----AGCUGGaG- -5'
19004 3' -57 NC_004684.1 + 57666 0.67 0.656375
Target:  5'- gGCCugGaCCccacagcaGGUgGCCAUCGGCCa- -3'
miRNA:   3'- -CGGugC-GGca------UCAgCGGUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 56920 0.71 0.421825
Target:  5'- aGCUGCGCCagGUGGUCGUgGUCGAUg-- -3'
miRNA:   3'- -CGGUGCGG--CAUCAGCGgUAGCUGgag -5'
19004 3' -57 NC_004684.1 + 56258 0.72 0.368905
Target:  5'- aGCgC-CGCCGUcGUCGCCGucgUCGGCCa- -3'
miRNA:   3'- -CG-GuGCGGCAuCAGCGGU---AGCUGGag -5'
19004 3' -57 NC_004684.1 + 56044 0.71 0.377404
Target:  5'- cCCGCuggaGCgCGgcGUCGgCGUCGGCCUCg -3'
miRNA:   3'- cGGUG----CG-GCauCAGCgGUAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 55549 0.66 0.667018
Target:  5'- cUCGCGCCGcUGGcCGCCGU-GGCC-Cg -3'
miRNA:   3'- cGGUGCGGC-AUCaGCGGUAgCUGGaG- -5'
19004 3' -57 NC_004684.1 + 54954 0.68 0.589208
Target:  5'- gGCCACGaCCGUggcagcaaacgccuGGUugcUGCCAgCGugCUCg -3'
miRNA:   3'- -CGGUGC-GGCA--------------UCA---GCGGUaGCugGAG- -5'
19004 3' -57 NC_004684.1 + 54282 0.71 0.421825
Target:  5'- cGCCACccgGCCGggGGUgCGCgCAUCGGCCc- -3'
miRNA:   3'- -CGGUG---CGGCa-UCA-GCG-GUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 52722 0.69 0.516191
Target:  5'- cGCCACGCuCGUAGgCGCUGUCcuccaggucgucguGGCCg- -3'
miRNA:   3'- -CGGUGCG-GCAUCaGCGGUAG--------------CUGGag -5'
19004 3' -57 NC_004684.1 + 51569 0.72 0.336241
Target:  5'- uGCCAU-CCGcaGGUCGCCAUCcugggGGCCUCg -3'
miRNA:   3'- -CGGUGcGGCa-UCAGCGGUAG-----CUGGAG- -5'
19004 3' -57 NC_004684.1 + 50588 0.66 0.667018
Target:  5'- aGCCuAUGCCGUcgGGUCGgCgGUCGGCg-- -3'
miRNA:   3'- -CGG-UGCGGCA--UCAGC-GgUAGCUGgag -5'
19004 3' -57 NC_004684.1 + 50387 0.71 0.421825
Target:  5'- gGgCACGCgUGaAGUCGCCGUCgGGCCUg -3'
miRNA:   3'- -CgGUGCG-GCaUCAGCGGUAG-CUGGAg -5'
19004 3' -57 NC_004684.1 + 50191 0.66 0.709186
Target:  5'- gGCCGCa-CGacGUUGCCGUCGGCgUCg -3'
miRNA:   3'- -CGGUGcgGCauCAGCGGUAGCUGgAG- -5'
19004 3' -57 NC_004684.1 + 49737 0.67 0.656375
Target:  5'- uCCACGCCGUGGUCggugcuccuggaGCCGcUgGGCUg- -3'
miRNA:   3'- cGGUGCGGCAUCAG------------CGGU-AgCUGGag -5'
19004 3' -57 NC_004684.1 + 49089 0.74 0.284283
Target:  5'- cGCCGCcaaccggcagguGCCacaGGUCGCCGUCGGCgUCg -3'
miRNA:   3'- -CGGUG------------CGGca-UCAGCGGUAGCUGgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.