miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19004 3' -57 NC_004684.1 + 48248 0.66 0.664892
Target:  5'- gGCCuuGCCGgggaggcguccGUUGUCGUCGGCCa- -3'
miRNA:   3'- -CGGugCGGCau---------CAGCGGUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 47991 0.68 0.571227
Target:  5'- gGCCGcCGaCCGUGGccugCGCUA-CGACCUg -3'
miRNA:   3'- -CGGU-GC-GGCAUCa---GCGGUaGCUGGAg -5'
19004 3' -57 NC_004684.1 + 47606 0.69 0.519254
Target:  5'- gGCCGCacaccGCCGUcGGuacUCGgCGUCGGCCUUg -3'
miRNA:   3'- -CGGUG-----CGGCA-UC---AGCgGUAGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 46681 0.68 0.539848
Target:  5'- aCCGcCGCCGUcGcCGCCGUCGAgCg- -3'
miRNA:   3'- cGGU-GCGGCAuCaGCGGUAGCUgGag -5'
19004 3' -57 NC_004684.1 + 46345 0.67 0.613683
Target:  5'- -aCACGaugggagCGUGGUgGUCGUCGugCUCg -3'
miRNA:   3'- cgGUGCg------GCAUCAgCGGUAGCugGAG- -5'
19004 3' -57 NC_004684.1 + 44923 0.66 0.667018
Target:  5'- -gCGCGCCGggUAGUCGgUggCGACgCUCa -3'
miRNA:   3'- cgGUGCGGC--AUCAGCgGuaGCUG-GAG- -5'
19004 3' -57 NC_004684.1 + 44681 0.66 0.698725
Target:  5'- cGCgAUGCCGauGUCGCUggcGUCGACUg- -3'
miRNA:   3'- -CGgUGCGGCauCAGCGG---UAGCUGGag -5'
19004 3' -57 NC_004684.1 + 44369 0.71 0.377404
Target:  5'- gGCgACGCCGUGcacgagugguguGcCGCCGUCGACUg- -3'
miRNA:   3'- -CGgUGCGGCAU------------CaGCGGUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 42641 0.69 0.498977
Target:  5'- gGCCACGCCGaAGccgaaCGCCGUcagcacgcCGACCa- -3'
miRNA:   3'- -CGGUGCGGCaUCa----GCGGUA--------GCUGGag -5'
19004 3' -57 NC_004684.1 + 42526 0.72 0.368905
Target:  5'- cGCuCAcCGCCGUGGUCGgCGugcugacggcguUCGGCUUCg -3'
miRNA:   3'- -CG-GU-GCGGCAUCAGCgGU------------AGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 42036 0.72 0.352305
Target:  5'- uCCAgGCCGuUGGUgcCGCCGUUGACCg- -3'
miRNA:   3'- cGGUgCGGC-AUCA--GCGGUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 41998 0.74 0.284283
Target:  5'- gGCCACGauGUcGUCGCgGUCGGCCa- -3'
miRNA:   3'- -CGGUGCggCAuCAGCGgUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 41990 0.68 0.560711
Target:  5'- cCCGCGCgGUGGcCGCUggCGAcaaCCUCc -3'
miRNA:   3'- cGGUGCGgCAUCaGCGGuaGCU---GGAG- -5'
19004 3' -57 NC_004684.1 + 41771 0.75 0.232913
Target:  5'- cGCCGCGCUGgguGUUGCCGaggUCGGCC-Cg -3'
miRNA:   3'- -CGGUGCGGCau-CAGCGGU---AGCUGGaG- -5'
19004 3' -57 NC_004684.1 + 41486 0.67 0.624355
Target:  5'- aCCGCGaCgGUAGgucgaauaGCCAUCGGCC-Cg -3'
miRNA:   3'- cGGUGC-GgCAUCag------CGGUAGCUGGaG- -5'
19004 3' -57 NC_004684.1 + 41023 0.68 0.557567
Target:  5'- aGCgGCGUgcccggaaucgucgCGUAGUCGCaAUCGGCCa- -3'
miRNA:   3'- -CGgUGCG--------------GCAUCAGCGgUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 40807 0.67 0.656375
Target:  5'- cGCCGCGCU--GGUCGUCc-CGGCCa- -3'
miRNA:   3'- -CGGUGCGGcaUCAGCGGuaGCUGGag -5'
19004 3' -57 NC_004684.1 + 40657 0.67 0.624355
Target:  5'- gGCCugGCCccgccAGUCGCgcUCGGCCa- -3'
miRNA:   3'- -CGGugCGGca---UCAGCGguAGCUGGag -5'
19004 3' -57 NC_004684.1 + 40518 0.7 0.440454
Target:  5'- cGCgCACGCCcaGGUUGUCGgcgguggCGACCUCc -3'
miRNA:   3'- -CG-GUGCGGcaUCAGCGGUa------GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 40337 0.66 0.698725
Target:  5'- nCgGCGCUGggcaGGUCGCUGgcggCGGCCUUg -3'
miRNA:   3'- cGgUGCGGCa---UCAGCGGUa---GCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.