miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19004 3' -57 NC_004684.1 + 37646 0.66 0.677631
Target:  5'- gGCCAUgGCCGcccGGUCaGgCAUCGACC-Cg -3'
miRNA:   3'- -CGGUG-CGGCa--UCAG-CgGUAGCUGGaG- -5'
19004 3' -57 NC_004684.1 + 44923 0.66 0.667018
Target:  5'- -gCGCGCCGggUAGUCGgUggCGACgCUCa -3'
miRNA:   3'- cgGUGCGGC--AUCAGCgGuaGCUG-GAG- -5'
19004 3' -57 NC_004684.1 + 6248 0.66 0.667018
Target:  5'- cGCCgcACGCUGgccGcCGCCGUCGAacugCUCa -3'
miRNA:   3'- -CGG--UGCGGCau-CaGCGGUAGCUg---GAG- -5'
19004 3' -57 NC_004684.1 + 63668 0.66 0.667018
Target:  5'- cGCCGCGCCGcgcagGCCgAUgGACCUg -3'
miRNA:   3'- -CGGUGCGGCaucagCGG-UAgCUGGAg -5'
19004 3' -57 NC_004684.1 + 2285 0.66 0.667018
Target:  5'- uCCuCGgCGUAGUgGCCGUgCGgcACCUCg -3'
miRNA:   3'- cGGuGCgGCAUCAgCGGUA-GC--UGGAG- -5'
19004 3' -57 NC_004684.1 + 58407 0.66 0.667018
Target:  5'- cGCCAUGacCCGgcGUCGCCggUGAgCUg -3'
miRNA:   3'- -CGGUGC--GGCauCAGCGGuaGCUgGAg -5'
19004 3' -57 NC_004684.1 + 50588 0.66 0.667018
Target:  5'- aGCCuAUGCCGUcgGGUCGgCgGUCGGCg-- -3'
miRNA:   3'- -CGG-UGCGGCA--UCAGC-GgUAGCUGgag -5'
19004 3' -57 NC_004684.1 + 55549 0.66 0.667018
Target:  5'- cUCGCGCCGcUGGcCGCCGU-GGCC-Cg -3'
miRNA:   3'- cGGUGCGGC-AUCaGCGGUAgCUGGaG- -5'
19004 3' -57 NC_004684.1 + 14414 0.66 0.667018
Target:  5'- uGUCA-GCgGUGGUCuuGCCAcCGACCUUc -3'
miRNA:   3'- -CGGUgCGgCAUCAG--CGGUaGCUGGAG- -5'
19004 3' -57 NC_004684.1 + 48248 0.66 0.664892
Target:  5'- gGCCuuGCCGgggaggcguccGUUGUCGUCGGCCa- -3'
miRNA:   3'- -CGGugCGGCau---------CAGCGGUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 49737 0.67 0.656375
Target:  5'- uCCACGCCGUGGUCggugcuccuggaGCCGcUgGGCUg- -3'
miRNA:   3'- cGGUGCGGCAUCAG------------CGGU-AgCUGGag -5'
19004 3' -57 NC_004684.1 + 57666 0.67 0.656375
Target:  5'- gGCCugGaCCccacagcaGGUgGCCAUCGGCCa- -3'
miRNA:   3'- -CGGugC-GGca------UCAgCGGUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 64619 0.67 0.656375
Target:  5'- gGCCGCcgaGCCGcUGGgCGUCAUCGguGCCUg -3'
miRNA:   3'- -CGGUG---CGGC-AUCaGCGGUAGC--UGGAg -5'
19004 3' -57 NC_004684.1 + 67250 0.67 0.656375
Target:  5'- aCCAUGCCGUAcaucGcCGCCA-CGAUCaUCg -3'
miRNA:   3'- cGGUGCGGCAU----CaGCGGUaGCUGG-AG- -5'
19004 3' -57 NC_004684.1 + 40807 0.67 0.656375
Target:  5'- cGCCGCGCU--GGUCGUCc-CGGCCa- -3'
miRNA:   3'- -CGGUGCGGcaUCAGCGGuaGCUGGag -5'
19004 3' -57 NC_004684.1 + 40289 0.67 0.655309
Target:  5'- aCCGCGCCGUcguuGGUgucgauggcguagCGCCcggcaggcaCGACCUCg -3'
miRNA:   3'- cGGUGCGGCA----UCA-------------GCGGua-------GCUGGAG- -5'
19004 3' -57 NC_004684.1 + 9378 0.67 0.645711
Target:  5'- cGCCAcCGUCGgcGUCGggaacucgaCAUCGGCCa- -3'
miRNA:   3'- -CGGU-GCGGCauCAGCg--------GUAGCUGGag -5'
19004 3' -57 NC_004684.1 + 39270 0.67 0.645711
Target:  5'- aCCACGCCGguucAG-CGCCucuAUCGACUc- -3'
miRNA:   3'- cGGUGCGGCa---UCaGCGG---UAGCUGGag -5'
19004 3' -57 NC_004684.1 + 34647 0.67 0.635034
Target:  5'- cGCCAgCGCgcucuCGUAGcUgGCCAU-GGCCUCg -3'
miRNA:   3'- -CGGU-GCG-----GCAUC-AgCGGUAgCUGGAG- -5'
19004 3' -57 NC_004684.1 + 939 0.67 0.635034
Target:  5'- cGUCGCguaGCUGUAGcaCGCCGUUGAUCUg -3'
miRNA:   3'- -CGGUG---CGGCAUCa-GCGGUAGCUGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.