Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19004 | 5' | -58 | NC_004684.1 | + | 31105 | 0.66 | 0.640032 |
Target: 5'- aGGAcGCCGcGCAGGCgcuggAGGaccUUGGCGAc -3' miRNA: 3'- gCCUaUGGC-UGUCCG-----UCC---AGCCGCUu -5' |
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19004 | 5' | -58 | NC_004684.1 | + | 65476 | 0.66 | 0.62933 |
Target: 5'- aGGc--CCGGCAGGcCGGGUcCGGCa-- -3' miRNA: 3'- gCCuauGGCUGUCC-GUCCA-GCCGcuu -5' |
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19004 | 5' | -58 | NC_004684.1 | + | 19027 | 0.66 | 0.62933 |
Target: 5'- cCGGGUuggcACCGGCggccGGGCAGGUCaugaaguGCGGc -3' miRNA: 3'- -GCCUA----UGGCUG----UCCGUCCAGc------CGCUu -5' |
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19004 | 5' | -58 | NC_004684.1 | + | 43454 | 0.66 | 0.62933 |
Target: 5'- gCGGcggGCgCGGCA-GCAGGUgCGGCGGc -3' miRNA: 3'- -GCCua-UG-GCUGUcCGUCCA-GCCGCUu -5' |
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19004 | 5' | -58 | NC_004684.1 | + | 13448 | 0.66 | 0.628261 |
Target: 5'- uCGGAUGgugauuuCCGGgAGGCugaucAGGUCGGuCGGGu -3' miRNA: 3'- -GCCUAU-------GGCUgUCCG-----UCCAGCC-GCUU- -5' |
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19004 | 5' | -58 | NC_004684.1 | + | 21122 | 0.66 | 0.607944 |
Target: 5'- aCGGGUcucGuuGGCGauuuGGCGGGUCaGCGAGc -3' miRNA: 3'- -GCCUA---UggCUGU----CCGUCCAGcCGCUU- -5' |
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19004 | 5' | -58 | NC_004684.1 | + | 27337 | 0.66 | 0.597276 |
Target: 5'- ----cGCCGACAGGaUGGGaUCGGUGAu -3' miRNA: 3'- gccuaUGGCUGUCC-GUCC-AGCCGCUu -5' |
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19004 | 5' | -58 | NC_004684.1 | + | 9887 | 0.66 | 0.586636 |
Target: 5'- uCGGGUGCCacCGGcGCAGGgccUCGGCGu- -3' miRNA: 3'- -GCCUAUGGcuGUC-CGUCC---AGCCGCuu -5' |
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19004 | 5' | -58 | NC_004684.1 | + | 42312 | 0.67 | 0.576032 |
Target: 5'- cCGG-UGCCGACAccGGCGGccacGUCGGCc-- -3' miRNA: 3'- -GCCuAUGGCUGU--CCGUC----CAGCCGcuu -5' |
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19004 | 5' | -58 | NC_004684.1 | + | 48966 | 0.67 | 0.565471 |
Target: 5'- gCGGGgugGCCGggGCGGGCGcGUCGGUGc- -3' miRNA: 3'- -GCCUa--UGGC--UGUCCGUcCAGCCGCuu -5' |
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19004 | 5' | -58 | NC_004684.1 | + | 47890 | 0.67 | 0.565471 |
Target: 5'- uGGAU-CaggucguaGGCAGGCcacGGUCGGCGGc -3' miRNA: 3'- gCCUAuGg-------CUGUCCGu--CCAGCCGCUu -5' |
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19004 | 5' | -58 | NC_004684.1 | + | 61803 | 0.67 | 0.554962 |
Target: 5'- uCGGccccgUCGGCAGGCGGGUCgccuugcaGGCGGu -3' miRNA: 3'- -GCCuau--GGCUGUCCGUCCAG--------CCGCUu -5' |
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19004 | 5' | -58 | NC_004684.1 | + | 64895 | 0.67 | 0.544511 |
Target: 5'- cCGGGUACCGAaaucaguGGGUcuuGG-CGGCGAc -3' miRNA: 3'- -GCCUAUGGCUg------UCCGu--CCaGCCGCUu -5' |
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19004 | 5' | -58 | NC_004684.1 | + | 59004 | 0.67 | 0.544511 |
Target: 5'- cCGGAgGCgggGugGGGCGGGgaCGGCGAGa -3' miRNA: 3'- -GCCUaUGg--CugUCCGUCCa-GCCGCUU- -5' |
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19004 | 5' | -58 | NC_004684.1 | + | 34548 | 0.67 | 0.534125 |
Target: 5'- cCGGGUGCCu-CGGGCAGGaUgGGCc-- -3' miRNA: 3'- -GCCUAUGGcuGUCCGUCC-AgCCGcuu -5' |
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19004 | 5' | -58 | NC_004684.1 | + | 47935 | 0.67 | 0.534125 |
Target: 5'- cCGGuucgcgcuacGUGCCGuCAGGCGGGUCcGaCGAGc -3' miRNA: 3'- -GCC----------UAUGGCuGUCCGUCCAGcC-GCUU- -5' |
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19004 | 5' | -58 | NC_004684.1 | + | 11721 | 0.67 | 0.534125 |
Target: 5'- -cGAUGCCGACGGuCAGG-CGGcCGAc -3' miRNA: 3'- gcCUAUGGCUGUCcGUCCaGCC-GCUu -5' |
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19004 | 5' | -58 | NC_004684.1 | + | 38463 | 0.67 | 0.534124 |
Target: 5'- gCGcGAUcaccGCCGACaAGGCAGGcacCGGCGu- -3' miRNA: 3'- -GC-CUA----UGGCUG-UCCGUCCa--GCCGCuu -5' |
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19004 | 5' | -58 | NC_004684.1 | + | 60632 | 0.67 | 0.523809 |
Target: 5'- aGGGUGUCGAC-GGCAccGGgcgCGGCGAGa -3' miRNA: 3'- gCCUAUGGCUGuCCGU--CCa--GCCGCUU- -5' |
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19004 | 5' | -58 | NC_004684.1 | + | 50579 | 0.68 | 0.483374 |
Target: 5'- gGGAgguugagccuaUGCCGuCGGGUcggcGGUCGGCGGGu -3' miRNA: 3'- gCCU-----------AUGGCuGUCCGu---CCAGCCGCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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