miRNA display CGI


Results 21 - 40 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19005 3' -60.8 NC_004684.1 + 22119 0.66 0.54102
Target:  5'- gGCCGgaaaCCGGaCGCaagGGCCGCGACCa- -3'
miRNA:   3'- -CGGUg---GGCCaGUGg--CUGGUGCUGGgc -5'
19005 3' -60.8 NC_004684.1 + 36922 0.66 0.54102
Target:  5'- aUCGCCCGGUCgagGCCGGguggaCACG-CCUGc -3'
miRNA:   3'- cGGUGGGCCAG---UGGCUg----GUGCuGGGC- -5'
19005 3' -60.8 NC_004684.1 + 12944 0.66 0.54102
Target:  5'- cGCCGucggcaccCCCGGUgcuccCGCCGACCgGCGGCaggcaacaCCGa -3'
miRNA:   3'- -CGGU--------GGGCCA-----GUGGCUGG-UGCUG--------GGC- -5'
19005 3' -60.8 NC_004684.1 + 604 0.66 0.54102
Target:  5'- aCCuCCgGGcCGCCuGACCuggACGACCUGg -3'
miRNA:   3'- cGGuGGgCCaGUGG-CUGG---UGCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 48817 0.66 0.54102
Target:  5'- aGCCACCagcgCGGUC-UUGACCuCGGCCg- -3'
miRNA:   3'- -CGGUGG----GCCAGuGGCUGGuGCUGGgc -5'
19005 3' -60.8 NC_004684.1 + 25991 0.66 0.54102
Target:  5'- cGCCACCgcgacgguaGGUCGaauaGCCAuCGGCCCGg -3'
miRNA:   3'- -CGGUGGg--------CCAGUggc-UGGU-GCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 32388 0.66 0.54102
Target:  5'- cGCCGCaCGcGUCACCcgGAUcagCACGGCCUGc -3'
miRNA:   3'- -CGGUGgGC-CAGUGG--CUG---GUGCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 898 0.66 0.535036
Target:  5'- cGCCGcgcaacauCCUGGUCAgCuaccacuacuucaagGGCUACGACCUGa -3'
miRNA:   3'- -CGGU--------GGGCCAGUgG---------------CUGGUGCUGGGC- -5'
19005 3' -60.8 NC_004684.1 + 11225 0.66 0.531061
Target:  5'- cGCCGCCgucGUCGCCGucgucgGCCAgGGCCaCGc -3'
miRNA:   3'- -CGGUGGgc-CAGUGGC------UGGUgCUGG-GC- -5'
19005 3' -60.8 NC_004684.1 + 9510 0.66 0.531061
Target:  5'- gGCCACCagccagCACCGGuCCugGCGugCCGg -3'
miRNA:   3'- -CGGUGGgcca--GUGGCU-GG--UGCugGGC- -5'
19005 3' -60.8 NC_004684.1 + 14894 0.66 0.531061
Target:  5'- cGCagaACCUGGaCACCuucguGGCCAUGGuCCCGu -3'
miRNA:   3'- -CGg--UGGGCCaGUGG-----CUGGUGCU-GGGC- -5'
19005 3' -60.8 NC_004684.1 + 26719 0.66 0.531061
Target:  5'- cGCCACCUuGcUgGCCGAgCGCGACUgGc -3'
miRNA:   3'- -CGGUGGGcC-AgUGGCUgGUGCUGGgC- -5'
19005 3' -60.8 NC_004684.1 + 4792 0.66 0.531061
Target:  5'- cGCCucgGCgCGGUgGCCGACCgcaACGGCaaGg -3'
miRNA:   3'- -CGG---UGgGCCAgUGGCUGG---UGCUGggC- -5'
19005 3' -60.8 NC_004684.1 + 29732 0.66 0.531061
Target:  5'- gGCgCACCgGGUCGaugcCUGACCggGCGGCCa- -3'
miRNA:   3'- -CG-GUGGgCCAGU----GGCUGG--UGCUGGgc -5'
19005 3' -60.8 NC_004684.1 + 6788 0.66 0.531061
Target:  5'- cGCCGggugaCCGGccugcgCACCGugCGCGGCgUGg -3'
miRNA:   3'- -CGGUg----GGCCa-----GUGGCugGUGCUGgGC- -5'
19005 3' -60.8 NC_004684.1 + 6214 0.66 0.521168
Target:  5'- gGCCACCaacccCGCCGACCugG-CCgGg -3'
miRNA:   3'- -CGGUGGgcca-GUGGCUGGugCuGGgC- -5'
19005 3' -60.8 NC_004684.1 + 45243 0.66 0.521168
Target:  5'- gGUCagGCCCGGcagccagCGCUGGUCGCGGCCCu -3'
miRNA:   3'- -CGG--UGGGCCa------GUGGCUGGUGCUGGGc -5'
19005 3' -60.8 NC_004684.1 + 26911 0.66 0.521168
Target:  5'- gGCgCACUCGG-CGCaGACCGCcgaGACCCc -3'
miRNA:   3'- -CG-GUGGGCCaGUGgCUGGUG---CUGGGc -5'
19005 3' -60.8 NC_004684.1 + 47904 0.66 0.521168
Target:  5'- gGCagGCCaCGGUCGgCGGCCuCGGCCa- -3'
miRNA:   3'- -CGg-UGG-GCCAGUgGCUGGuGCUGGgc -5'
19005 3' -60.8 NC_004684.1 + 48615 0.66 0.521168
Target:  5'- cCCACCuCGGU-GCCGugCGCcucuucccaGGCCCa -3'
miRNA:   3'- cGGUGG-GCCAgUGGCugGUG---------CUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.