miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19006 3' -61 NC_004684.1 + 28819 0.66 0.431307
Target:  5'- gAugUUGGGGuCCGGCGACUcgauUGCgGCGAa -3'
miRNA:   3'- -UugGGCCUCuGGUCGCUGG----ACG-CGCU- -5'
19006 3' -61 NC_004684.1 + 1483 0.66 0.431307
Target:  5'- uGCCCGGugcggcGGCCcuGGUGgccaACCUGCGCGc -3'
miRNA:   3'- uUGGGCCu-----CUGG--UCGC----UGGACGCGCu -5'
19006 3' -61 NC_004684.1 + 42548 0.67 0.425819
Target:  5'- cGGCCCGGuGgcgcuACCgcugccgcccuguguGGUGuCCUGCGCGAu -3'
miRNA:   3'- -UUGGGCCuC-----UGG---------------UCGCuGGACGCGCU- -5'
19006 3' -61 NC_004684.1 + 63349 0.67 0.421276
Target:  5'- -cCCCGGuGACCgcccagcgcaccgAGCGGCCgacGCGCc- -3'
miRNA:   3'- uuGGGCCuCUGG-------------UCGCUGGa--CGCGcu -5'
19006 3' -61 NC_004684.1 + 2782 0.67 0.416763
Target:  5'- cAGCCUGGAcGCCAGCGaguucgaguucgccgAggccaagaagcuCCUGCGCGGg -3'
miRNA:   3'- -UUGGGCCUcUGGUCGC---------------U------------GGACGCGCU- -5'
19006 3' -61 NC_004684.1 + 39039 0.67 0.413174
Target:  5'- cACCCGGuAGA-CGGUGGCCUGCugguuGCGc -3'
miRNA:   3'- uUGGGCC-UCUgGUCGCUGGACG-----CGCu -5'
19006 3' -61 NC_004684.1 + 67090 0.67 0.413174
Target:  5'- uGGCCuCGGcGGCCAGCGAacuCUUGUGCc- -3'
miRNA:   3'- -UUGG-GCCuCUGGUCGCU---GGACGCGcu -5'
19006 3' -61 NC_004684.1 + 34058 0.67 0.404286
Target:  5'- uACUucaaGGGGcacACCGGCGACCcugGCGCGGc -3'
miRNA:   3'- uUGGg---CCUC---UGGUCGCUGGa--CGCGCU- -5'
19006 3' -61 NC_004684.1 + 29101 0.67 0.404286
Target:  5'- uGGCCUGGAG-CC-GUGAgCUGCGCc- -3'
miRNA:   3'- -UUGGGCCUCuGGuCGCUgGACGCGcu -5'
19006 3' -61 NC_004684.1 + 41961 0.67 0.404286
Target:  5'- cGGCCUGGAgGACCgcaaGGCGuucuauGCCcGCGCGGu -3'
miRNA:   3'- -UUGGGCCU-CUGG----UCGC------UGGaCGCGCU- -5'
19006 3' -61 NC_004684.1 + 41082 0.67 0.404286
Target:  5'- cGGCCCGGcGGCCuGGcCGAgCUGCGUa- -3'
miRNA:   3'- -UUGGGCCuCUGG-UC-GCUgGACGCGcu -5'
19006 3' -61 NC_004684.1 + 63500 0.67 0.404286
Target:  5'- uACCCGGAgaggaugucuGACCAGgccuUGGCaCUGCGCa- -3'
miRNA:   3'- uUGGGCCU----------CUGGUC----GCUG-GACGCGcu -5'
19006 3' -61 NC_004684.1 + 37332 0.67 0.399011
Target:  5'- uACCUGGAaagcccgccgcaaccGACCGGCGAgC-GCGCGu -3'
miRNA:   3'- uUGGGCCU---------------CUGGUCGCUgGaCGCGCu -5'
19006 3' -61 NC_004684.1 + 9338 0.67 0.395519
Target:  5'- gGACgaGGAGGCCuccgguGCGuCCcgGCGCGAg -3'
miRNA:   3'- -UUGggCCUCUGGu-----CGCuGGa-CGCGCU- -5'
19006 3' -61 NC_004684.1 + 5847 0.67 0.386876
Target:  5'- cACCCGGAccaACCAGCGGCaCgccaGCGCc- -3'
miRNA:   3'- uUGGGCCUc--UGGUCGCUG-Ga---CGCGcu -5'
19006 3' -61 NC_004684.1 + 56048 0.67 0.38175
Target:  5'- gGGCCUGGAGGCCgccgucaaggcgcaaGGCguggagGugCUGUGCGGc -3'
miRNA:   3'- -UUGGGCCUCUGG---------------UCG------CugGACGCGCU- -5'
19006 3' -61 NC_004684.1 + 57020 0.67 0.378358
Target:  5'- uACCCGGcGGugCGcGCGAUCUcGCGCa- -3'
miRNA:   3'- uUGGGCC-UCugGU-CGCUGGA-CGCGcu -5'
19006 3' -61 NC_004684.1 + 65476 0.67 0.378358
Target:  5'- aGGCCCGGcAGGCCGGgucCGGCaggUGCGgGAu -3'
miRNA:   3'- -UUGGGCC-UCUGGUC---GCUGg--ACGCgCU- -5'
19006 3' -61 NC_004684.1 + 2513 0.68 0.369967
Target:  5'- uACCCGGGGGC--GCGACCggacaacGCGCa- -3'
miRNA:   3'- uUGGGCCUCUGguCGCUGGa------CGCGcu -5'
19006 3' -61 NC_004684.1 + 18345 0.68 0.361704
Target:  5'- -cCCCGGAgccGACCGGCGGCgCgGUGCc- -3'
miRNA:   3'- uuGGGCCU---CUGGUCGCUG-GaCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.