miRNA display CGI


Results 21 - 40 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19006 5' -54.9 NC_004684.1 + 40113 0.66 0.786067
Target:  5'- gGCCGUagcggGCGcuGGcGGCcUCGGCACCGa -3'
miRNA:   3'- aCGGCGga---UGU--UC-CUGuAGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 29867 0.66 0.785091
Target:  5'- cGCCGCCgcagucgUGCAucAGGuCGUCGuaACCGg -3'
miRNA:   3'- aCGGCGG-------AUGU--UCCuGUAGCugUGGC- -5'
19006 5' -54.9 NC_004684.1 + 33697 0.66 0.780187
Target:  5'- cUGCCGCUgGCGAGGguguccagcGCGgugguggugcacagCGACGCCa -3'
miRNA:   3'- -ACGGCGGaUGUUCC---------UGUa-------------GCUGUGGc -5'
19006 5' -54.9 NC_004684.1 + 51516 0.66 0.777226
Target:  5'- cGCCGCCUGgcGGGACAccuucuccagguagcCGAgCACCu -3'
miRNA:   3'- aCGGCGGAUguUCCUGUa--------------GCU-GUGGc -5'
19006 5' -54.9 NC_004684.1 + 707 0.66 0.776236
Target:  5'- cGCCGCCgGguGGGAagaccUgGGCACCGc -3'
miRNA:   3'- aCGGCGGaUguUCCUgu---AgCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 63722 0.66 0.776236
Target:  5'- aGCgUGCCaACAGGGugugcGCAUCGGUGCCGa -3'
miRNA:   3'- aCG-GCGGaUGUUCC-----UGUAGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 28949 0.66 0.776236
Target:  5'- cGCCGUCgGCAAccuuGGACGUgGuCACCc -3'
miRNA:   3'- aCGGCGGaUGUU----CCUGUAgCuGUGGc -5'
19006 5' -54.9 NC_004684.1 + 5694 0.66 0.776236
Target:  5'- gGCCcgGCCUGCccacGGCAcCGACGCCa -3'
miRNA:   3'- aCGG--CGGAUGuuc-CUGUaGCUGUGGc -5'
19006 5' -54.9 NC_004684.1 + 7637 0.66 0.776236
Target:  5'- aGCuCGCCgugGC--GGGCGUgGugACCGg -3'
miRNA:   3'- aCG-GCGGa--UGuuCCUGUAgCugUGGC- -5'
19006 5' -54.9 NC_004684.1 + 15923 0.66 0.776236
Target:  5'- gGUCGCCauccUggGGGCcUCGGcCACCGg -3'
miRNA:   3'- aCGGCGGau--GuuCCUGuAGCU-GUGGC- -5'
19006 5' -54.9 NC_004684.1 + 2496 0.66 0.776236
Target:  5'- aGCUG-CUAUGAGGGCGgccucaaCGACGCCc -3'
miRNA:   3'- aCGGCgGAUGUUCCUGUa------GCUGUGGc -5'
19006 5' -54.9 NC_004684.1 + 22673 0.66 0.776236
Target:  5'- gGCCGCagaagcgcuCAAGGACAU-GGCcCCGg -3'
miRNA:   3'- aCGGCGgau------GUUCCUGUAgCUGuGGC- -5'
19006 5' -54.9 NC_004684.1 + 24759 0.66 0.776236
Target:  5'- -cCUGCUgGCAGGGAagacCGGCACCGg -3'
miRNA:   3'- acGGCGGaUGUUCCUgua-GCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 32582 0.66 0.776236
Target:  5'- gGCuCGCuCUACAAGGuguacaagaACggCGugGCCGu -3'
miRNA:   3'- aCG-GCG-GAUGUUCC---------UGuaGCugUGGC- -5'
19006 5' -54.9 NC_004684.1 + 50593 0.66 0.776236
Target:  5'- aUGCCGUCgggucgGCGgucggcGGGuCAUCGGCgugGCCGa -3'
miRNA:   3'- -ACGGCGGa-----UGU------UCCuGUAGCUG---UGGC- -5'
19006 5' -54.9 NC_004684.1 + 19147 0.66 0.776236
Target:  5'- -cCCGCCgUGCAAGaccaacaauACGUCGACAUCGc -3'
miRNA:   3'- acGGCGG-AUGUUCc--------UGUAGCUGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 38743 0.66 0.775245
Target:  5'- cGCCGUCUcgcgGCAccggaacGGGuaguccauCGUCGGCACCu -3'
miRNA:   3'- aCGGCGGA----UGU-------UCCu-------GUAGCUGUGGc -5'
19006 5' -54.9 NC_004684.1 + 26407 0.66 0.774253
Target:  5'- cGCCGCCaccggcgcgcugGCAGcGGGguUCGcCGCCGg -3'
miRNA:   3'- aCGGCGGa-----------UGUU-CCUguAGCuGUGGC- -5'
19006 5' -54.9 NC_004684.1 + 4806 0.66 0.76626
Target:  5'- gGCCGaCCgcaacgGCAAGG-UGUCGAUuCCGg -3'
miRNA:   3'- aCGGC-GGa-----UGUUCCuGUAGCUGuGGC- -5'
19006 5' -54.9 NC_004684.1 + 63460 0.66 0.76626
Target:  5'- cGCCGCCcaguuccgGCAuucgGGGGCG-CGAgGCCu -3'
miRNA:   3'- aCGGCGGa-------UGU----UCCUGUaGCUgUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.