miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19007 3' -65.8 NC_004684.1 + 25423 0.66 0.279476
Target:  5'- gGGGugccuCCGACCU-UGCCGCUggccugucggacuGCUCCGGu -3'
miRNA:   3'- gCCC-----GGCUGGAcGCGGCGG-------------CGAGGCU- -5'
19007 3' -65.8 NC_004684.1 + 49340 0.67 0.273701
Target:  5'- cCGGGCagucguccucGCCUuCGCCGCCGgUCCa- -3'
miRNA:   3'- -GCCCGgc--------UGGAcGCGGCGGCgAGGcu -5'
19007 3' -65.8 NC_004684.1 + 35453 0.67 0.273701
Target:  5'- gCGGG-CGACCguUGCgGCCggGCCGCgacugUCCGAa -3'
miRNA:   3'- -GCCCgGCUGG--ACG-CGG--CGGCG-----AGGCU- -5'
19007 3' -65.8 NC_004684.1 + 47033 0.67 0.273701
Target:  5'- uCGGGgUGGCCUGCGCgGUgacggUGCaCCGGg -3'
miRNA:   3'- -GCCCgGCUGGACGCGgCG-----GCGaGGCU- -5'
19007 3' -65.8 NC_004684.1 + 30634 0.67 0.267397
Target:  5'- cCGGGCgCGGCCcugGCGgCGUCaGCgCCGGg -3'
miRNA:   3'- -GCCCG-GCUGGa--CGCgGCGG-CGaGGCU- -5'
19007 3' -65.8 NC_004684.1 + 18470 0.67 0.267397
Target:  5'- aCGaGGCCgGGCCUGCGgacCCGCaCGUgCUGAa -3'
miRNA:   3'- -GC-CCGG-CUGGACGC---GGCG-GCGaGGCU- -5'
19007 3' -65.8 NC_004684.1 + 33683 0.67 0.26121
Target:  5'- uCGGGCC-ACC-GcCGCUGCCGCUggCGAg -3'
miRNA:   3'- -GCCCGGcUGGaC-GCGGCGGCGAg-GCU- -5'
19007 3' -65.8 NC_004684.1 + 26314 0.67 0.261209
Target:  5'- -cGGCCaGGCCgccGgGCCGCCGauugCCGAc -3'
miRNA:   3'- gcCCGG-CUGGa--CgCGGCGGCga--GGCU- -5'
19007 3' -65.8 NC_004684.1 + 63447 0.67 0.261209
Target:  5'- gCGuGGUCG-CCUuCGCCGCCcaGUUCCGGc -3'
miRNA:   3'- -GC-CCGGCuGGAcGCGGCGG--CGAGGCU- -5'
19007 3' -65.8 NC_004684.1 + 32922 0.67 0.260598
Target:  5'- gCGGuGCCgGACCggGUGCCucgggcaggauggGCCGCUCgGGc -3'
miRNA:   3'- -GCC-CGG-CUGGa-CGCGG-------------CGGCGAGgCU- -5'
19007 3' -65.8 NC_004684.1 + 27512 0.67 0.260597
Target:  5'- gCGGGCCagaggcuggcaagGACgUGCGCaGCCGCcugCUGGa -3'
miRNA:   3'- -GCCCGG-------------CUGgACGCGgCGGCGa--GGCU- -5'
19007 3' -65.8 NC_004684.1 + 40924 0.67 0.25514
Target:  5'- gCGGGCacgcugucgCGGCCaggcGUGCCGCCGUacaCCGGg -3'
miRNA:   3'- -GCCCG---------GCUGGa---CGCGGCGGCGa--GGCU- -5'
19007 3' -65.8 NC_004684.1 + 39388 0.67 0.25514
Target:  5'- -aGGCCaucGACCUGCaucacccagacGCCGCCGaaCUCCGc -3'
miRNA:   3'- gcCCGG---CUGGACG-----------CGGCGGC--GAGGCu -5'
19007 3' -65.8 NC_004684.1 + 22160 0.67 0.25454
Target:  5'- cCGGGCCuGACCagcaccaaGCGCCGCauggacgCGCUgCCGc -3'
miRNA:   3'- -GCCCGG-CUGGa-------CGCGGCG-------GCGA-GGCu -5'
19007 3' -65.8 NC_004684.1 + 60712 0.67 0.249187
Target:  5'- -aGGUCGACCUGUGCagGCCaCUCCc- -3'
miRNA:   3'- gcCCGGCUGGACGCGg-CGGcGAGGcu -5'
19007 3' -65.8 NC_004684.1 + 12178 0.67 0.248598
Target:  5'- gCGGuGCCaacGCCUcguaggcauccaGCGCCGCCGCcagcggugcguucUCCGGg -3'
miRNA:   3'- -GCC-CGGc--UGGA------------CGCGGCGGCG-------------AGGCU- -5'
19007 3' -65.8 NC_004684.1 + 3208 0.67 0.243348
Target:  5'- cCGGcaacGCCGACgUGCGCCuggaagaggugcGCCGCaUCCu- -3'
miRNA:   3'- -GCC----CGGCUGgACGCGG------------CGGCG-AGGcu -5'
19007 3' -65.8 NC_004684.1 + 7328 0.67 0.243348
Target:  5'- aCGGGCCG-CC-GgGCCGCgCGC-CaCGAg -3'
miRNA:   3'- -GCCCGGCuGGaCgCGGCG-GCGaG-GCU- -5'
19007 3' -65.8 NC_004684.1 + 36768 0.67 0.243348
Target:  5'- aGGGCCGcGCCcgGUGCCGaCGCUggUCGGc -3'
miRNA:   3'- gCCCGGC-UGGa-CGCGGCgGCGA--GGCU- -5'
19007 3' -65.8 NC_004684.1 + 55945 0.67 0.243348
Target:  5'- gCGaGGCCGACgCcGaCGCCGC-GCUCCa- -3'
miRNA:   3'- -GC-CCGGCUG-GaC-GCGGCGgCGAGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.