Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19007 | 5' | -52 | NC_004684.1 | + | 46447 | 1.09 | 0.00265 |
Target: 5'- uAGUCGAAACCUUCGUAGCGCACGCUGa -3' miRNA: 3'- -UCAGCUUUGGAAGCAUCGCGUGCGAC- -5' |
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19007 | 5' | -52 | NC_004684.1 | + | 4964 | 0.74 | 0.479956 |
Target: 5'- --aCGAGGCCUUCGgacuGCGCAC-CUGg -3' miRNA: 3'- ucaGCUUUGGAAGCau--CGCGUGcGAC- -5' |
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19007 | 5' | -52 | NC_004684.1 | + | 66713 | 0.72 | 0.587236 |
Target: 5'- -cUCGggGCCga-GgaucaGGCGCACGCUGu -3' miRNA: 3'- ucAGCuuUGGaagCa----UCGCGUGCGAC- -5' |
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19007 | 5' | -52 | NC_004684.1 | + | 15354 | 0.7 | 0.698069 |
Target: 5'- cGGuUUGucGCCaUCGcggAGCGCGCGCUGg -3' miRNA: 3'- -UC-AGCuuUGGaAGCa--UCGCGUGCGAC- -5' |
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19007 | 5' | -52 | NC_004684.1 | + | 25730 | 0.7 | 0.708976 |
Target: 5'- aGGUCGGcccGGCCUUCGUA-CGC-CGCa- -3' miRNA: 3'- -UCAGCU---UUGGAAGCAUcGCGuGCGac -5' |
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19007 | 5' | -52 | NC_004684.1 | + | 64628 | 0.69 | 0.751711 |
Target: 5'- cAGcUCGuuGCCgucggcgUCGUGGCGCACcGCg- -3' miRNA: 3'- -UC-AGCuuUGGa------AGCAUCGCGUG-CGac -5' |
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19007 | 5' | -52 | NC_004684.1 | + | 1754 | 0.69 | 0.751711 |
Target: 5'- aGGUCGGGACCggagcuGCGCGCGUg- -3' miRNA: 3'- -UCAGCUUUGGaagcauCGCGUGCGac -5' |
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19007 | 5' | -52 | NC_004684.1 | + | 39253 | 0.69 | 0.762114 |
Target: 5'- uAGUUGAGGCCUgCGUGcGUGCAgGCc- -3' miRNA: 3'- -UCAGCUUUGGAaGCAU-CGCGUgCGac -5' |
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19007 | 5' | -52 | NC_004684.1 | + | 57062 | 0.69 | 0.77238 |
Target: 5'- gGGUCGAuggcGGCCUgCGUuGCGgCGCGCa- -3' miRNA: 3'- -UCAGCU----UUGGAaGCAuCGC-GUGCGac -5' |
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19007 | 5' | -52 | NC_004684.1 | + | 28115 | 0.69 | 0.77238 |
Target: 5'- cGGuUCGAGGCCUugcUgGUGGCcuGCACGCa- -3' miRNA: 3'- -UC-AGCUUUGGA---AgCAUCG--CGUGCGac -5' |
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19007 | 5' | -52 | NC_004684.1 | + | 55400 | 0.69 | 0.77238 |
Target: 5'- ---gGAAACCUUCGcuGCGCugGCg- -3' miRNA: 3'- ucagCUUUGGAAGCauCGCGugCGac -5' |
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19007 | 5' | -52 | NC_004684.1 | + | 42235 | 0.68 | 0.826812 |
Target: 5'- cGUCGgcACCcaugcccuuuuucUUGUuGCGCGCGCUGg -3' miRNA: 3'- uCAGCuuUGGa------------AGCAuCGCGUGCGAC- -5' |
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19007 | 5' | -52 | NC_004684.1 | + | 2952 | 0.68 | 0.83047 |
Target: 5'- --cCGAGGCCaUCGgcGCGC-UGCUGu -3' miRNA: 3'- ucaGCUUUGGaAGCauCGCGuGCGAC- -5' |
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19007 | 5' | -52 | NC_004684.1 | + | 12582 | 0.68 | 0.839466 |
Target: 5'- cGGUCGAAcucaGCCagggucaUCGgcuccUGGCGCGCGCUc -3' miRNA: 3'- -UCAGCUU----UGGa------AGC-----AUCGCGUGCGAc -5' |
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19007 | 5' | -52 | NC_004684.1 | + | 62928 | 0.67 | 0.86508 |
Target: 5'- cGGUgaCGAAGCCgaccagcgCGcGGCGCGCGCc- -3' miRNA: 3'- -UCA--GCUUUGGaa------GCaUCGCGUGCGac -5' |
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19007 | 5' | -52 | NC_004684.1 | + | 17852 | 0.67 | 0.873132 |
Target: 5'- aAGUCGGccACCgcgcacacCGccgGGUGCACGCUGg -3' miRNA: 3'- -UCAGCUu-UGGaa------GCa--UCGCGUGCGAC- -5' |
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19007 | 5' | -52 | NC_004684.1 | + | 4564 | 0.67 | 0.880929 |
Target: 5'- uGcCGAGGCCaUCGaGGCGC-UGCUGc -3' miRNA: 3'- uCaGCUUUGGaAGCaUCGCGuGCGAC- -5' |
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19007 | 5' | -52 | NC_004684.1 | + | 9739 | 0.67 | 0.880929 |
Target: 5'- gGGUCcAGGCCUcaaUCGgGGUGUACGCg- -3' miRNA: 3'- -UCAGcUUUGGA---AGCaUCGCGUGCGac -5' |
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19007 | 5' | -52 | NC_004684.1 | + | 19045 | 0.67 | 0.880929 |
Target: 5'- --cCGAGACCgccCGUGGauccaGCGCGCUc -3' miRNA: 3'- ucaGCUUUGGaa-GCAUCg----CGUGCGAc -5' |
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19007 | 5' | -52 | NC_004684.1 | + | 39172 | 0.67 | 0.880929 |
Target: 5'- gGGUgGGcGGCCag-GUAGCGCAgGCUGg -3' miRNA: 3'- -UCAgCU-UUGGaagCAUCGCGUgCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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