miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19007 5' -52 NC_004684.1 + 55400 0.69 0.77238
Target:  5'- ---gGAAACCUUCGcuGCGCugGCg- -3'
miRNA:   3'- ucagCUUUGGAAGCauCGCGugCGac -5'
19007 5' -52 NC_004684.1 + 28115 0.69 0.77238
Target:  5'- cGGuUCGAGGCCUugcUgGUGGCcuGCACGCa- -3'
miRNA:   3'- -UC-AGCUUUGGA---AgCAUCG--CGUGCGac -5'
19007 5' -52 NC_004684.1 + 57062 0.69 0.77238
Target:  5'- gGGUCGAuggcGGCCUgCGUuGCGgCGCGCa- -3'
miRNA:   3'- -UCAGCU----UUGGAaGCAuCGC-GUGCGac -5'
19007 5' -52 NC_004684.1 + 39253 0.69 0.762114
Target:  5'- uAGUUGAGGCCUgCGUGcGUGCAgGCc- -3'
miRNA:   3'- -UCAGCUUUGGAaGCAU-CGCGUgCGac -5'
19007 5' -52 NC_004684.1 + 1754 0.69 0.751711
Target:  5'- aGGUCGGGACCggagcuGCGCGCGUg- -3'
miRNA:   3'- -UCAGCUUUGGaagcauCGCGUGCGac -5'
19007 5' -52 NC_004684.1 + 64628 0.69 0.751711
Target:  5'- cAGcUCGuuGCCgucggcgUCGUGGCGCACcGCg- -3'
miRNA:   3'- -UC-AGCuuUGGa------AGCAUCGCGUG-CGac -5'
19007 5' -52 NC_004684.1 + 25730 0.7 0.708976
Target:  5'- aGGUCGGcccGGCCUUCGUA-CGC-CGCa- -3'
miRNA:   3'- -UCAGCU---UUGGAAGCAUcGCGuGCGac -5'
19007 5' -52 NC_004684.1 + 15354 0.7 0.698069
Target:  5'- cGGuUUGucGCCaUCGcggAGCGCGCGCUGg -3'
miRNA:   3'- -UC-AGCuuUGGaAGCa--UCGCGUGCGAC- -5'
19007 5' -52 NC_004684.1 + 66713 0.72 0.587236
Target:  5'- -cUCGggGCCga-GgaucaGGCGCACGCUGu -3'
miRNA:   3'- ucAGCuuUGGaagCa----UCGCGUGCGAC- -5'
19007 5' -52 NC_004684.1 + 4964 0.74 0.479956
Target:  5'- --aCGAGGCCUUCGgacuGCGCAC-CUGg -3'
miRNA:   3'- ucaGCUUUGGAAGCau--CGCGUGcGAC- -5'
19007 5' -52 NC_004684.1 + 46447 1.09 0.00265
Target:  5'- uAGUCGAAACCUUCGUAGCGCACGCUGa -3'
miRNA:   3'- -UCAGCUUUGGAAGCAUCGCGUGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.