miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1901 5' -53.7 NC_001347.2 + 81868 0.66 0.986646
Target:  5'- gGGCGGCgccCGUCUCAaagagguccggccCCAGGUAG-UCg -3'
miRNA:   3'- -CCGCCG---GCGGAGUau-----------GGUCCAUUuAG- -5'
1901 5' -53.7 NC_001347.2 + 117849 0.66 0.986646
Target:  5'- cGGCGGCCGCUgacgcggcgaccgcgUCAga-CGGGgcGAc- -3'
miRNA:   3'- -CCGCCGGCGG---------------AGUaugGUCCauUUag -5'
1901 5' -53.7 NC_001347.2 + 161147 0.66 0.985998
Target:  5'- aGGCGGUCGCgcauuaUCAgcGCgGGGUcgGUCu -3'
miRNA:   3'- -CCGCCGGCGg-----AGUa-UGgUCCAuuUAG- -5'
1901 5' -53.7 NC_001347.2 + 229536 0.66 0.985998
Target:  5'- cGCGGCgGgUgggugUGUGCCGGGUGuGUCg -3'
miRNA:   3'- cCGCCGgCgGa----GUAUGGUCCAUuUAG- -5'
1901 5' -53.7 NC_001347.2 + 86576 0.66 0.984273
Target:  5'- uGGCGG-CGCCUCGguauuuuccccGCC-GGUGGGUUu -3'
miRNA:   3'- -CCGCCgGCGGAGUa----------UGGuCCAUUUAG- -5'
1901 5' -53.7 NC_001347.2 + 60724 0.66 0.982391
Target:  5'- uGGCGGCCGCgaUuggaAUCGGGUGGu-- -3'
miRNA:   3'- -CCGCCGGCGgaGua--UGGUCCAUUuag -5'
1901 5' -53.7 NC_001347.2 + 133824 0.66 0.980344
Target:  5'- cGGCGGCUGuCCUaaaaugACUAGGUucGUa -3'
miRNA:   3'- -CCGCCGGC-GGAgua---UGGUCCAuuUAg -5'
1901 5' -53.7 NC_001347.2 + 24348 0.66 0.980344
Target:  5'- uGGUGGCCGUgCUgg-GCUGGGUGcAUCg -3'
miRNA:   3'- -CCGCCGGCG-GAguaUGGUCCAUuUAG- -5'
1901 5' -53.7 NC_001347.2 + 171325 0.67 0.978125
Target:  5'- gGGCGGCCugucucccggcgGCuCUCGgACCuGGGUcagGAGUCg -3'
miRNA:   3'- -CCGCCGG------------CG-GAGUaUGG-UCCA---UUUAG- -5'
1901 5' -53.7 NC_001347.2 + 60534 0.67 0.975727
Target:  5'- cGCGGCgGCCcUGUGgaAGGUAGAUUa -3'
miRNA:   3'- cCGCCGgCGGaGUAUggUCCAUUUAG- -5'
1901 5' -53.7 NC_001347.2 + 40611 0.67 0.975727
Target:  5'- -cUGGCCGCCggCgAUGCCGGGgu-GUUg -3'
miRNA:   3'- ccGCCGGCGGa-G-UAUGGUCCauuUAG- -5'
1901 5' -53.7 NC_001347.2 + 6583 0.67 0.975727
Target:  5'- gGGCGGCgGCCUCGUcucACCGa------- -3'
miRNA:   3'- -CCGCCGgCGGAGUA---UGGUccauuuag -5'
1901 5' -53.7 NC_001347.2 + 201862 0.67 0.975477
Target:  5'- cGCGGCCGaCUCAUGgUcauGGGUGAuuacagcGUCa -3'
miRNA:   3'- cCGCCGGCgGAGUAUgG---UCCAUU-------UAG- -5'
1901 5' -53.7 NC_001347.2 + 126235 0.67 0.973141
Target:  5'- cGCGGCCGUgcuacgucauCUCA-ACCAGGUcu-UCc -3'
miRNA:   3'- cCGCCGGCG----------GAGUaUGGUCCAuuuAG- -5'
1901 5' -53.7 NC_001347.2 + 98527 0.67 0.970363
Target:  5'- cGCuGuGCCGCCUCAaaUACUAGGc-GGUCc -3'
miRNA:   3'- cCG-C-CGGCGGAGU--AUGGUCCauUUAG- -5'
1901 5' -53.7 NC_001347.2 + 161583 0.67 0.970363
Target:  5'- cGGC-GCCGCCggcuacgCGU-CCGGGUuccAGUCg -3'
miRNA:   3'- -CCGcCGGCGGa------GUAuGGUCCAu--UUAG- -5'
1901 5' -53.7 NC_001347.2 + 94768 0.67 0.967384
Target:  5'- aGGCGGUCGCgCUCG-ACCAccuccUGGAUCa -3'
miRNA:   3'- -CCGCCGGCG-GAGUaUGGUcc---AUUUAG- -5'
1901 5' -53.7 NC_001347.2 + 145565 0.67 0.964199
Target:  5'- cGCGGCCGUCUCGggugucuUCAGGg----- -3'
miRNA:   3'- cCGCCGGCGGAGUau-----GGUCCauuuag -5'
1901 5' -53.7 NC_001347.2 + 160965 0.67 0.964199
Target:  5'- aGCGG-CGCCgcCAUGCCAGGg----- -3'
miRNA:   3'- cCGCCgGCGGa-GUAUGGUCCauuuag -5'
1901 5' -53.7 NC_001347.2 + 98217 0.68 0.953356
Target:  5'- uGCGGCCGCCgagCAcaAUCGaaacaacgucuGGUGGAUCa -3'
miRNA:   3'- cCGCCGGCGGa--GUa-UGGU-----------CCAUUUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.