miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19010 3' -63.7 NC_004684.1 + 1925 0.67 0.337461
Target:  5'- cGGCCUgCcgGGCCUgguaCCggcgcacgGuGGCCGCGCGc -3'
miRNA:   3'- -CCGGG-GuaCCGGA----GGa-------C-CUGGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 11782 0.67 0.329929
Target:  5'- uGGCCCCGUgGGCCgaCCaGGccACCguggagaaggGCGCGa -3'
miRNA:   3'- -CCGGGGUA-CCGGa-GGaCC--UGG----------CGCGC- -5'
19010 3' -63.7 NC_004684.1 + 7563 0.67 0.329929
Target:  5'- cGGCCCCggGUGGCgCUggugcggCUGGugCGCgGCa -3'
miRNA:   3'- -CCGGGG--UACCG-GAg------GACCugGCG-CGc -5'
19010 3' -63.7 NC_004684.1 + 31193 0.67 0.322523
Target:  5'- aGGCCUCGUagagGGCCUggaagacgaCCUGG-CCGaCGCc -3'
miRNA:   3'- -CCGGGGUA----CCGGA---------GGACCuGGC-GCGc -5'
19010 3' -63.7 NC_004684.1 + 9979 0.67 0.319595
Target:  5'- cGGCacaCCGgucgagugauacgcUGGCCgCCUGGAuagcgacugguaaCCGCGCa -3'
miRNA:   3'- -CCGg--GGU--------------ACCGGaGGACCU-------------GGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 33646 0.67 0.315241
Target:  5'- aGGUCggg-GGCgUCCUGG-CCGCGCu -3'
miRNA:   3'- -CCGGgguaCCGgAGGACCuGGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 11361 0.67 0.31452
Target:  5'- aGGCCCacggugGUGGCCagcagCgUGGuggugcgcgacuuGCCGCGCGc -3'
miRNA:   3'- -CCGGGg-----UACCGGa----GgACC-------------UGGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 42215 0.67 0.308084
Target:  5'- uGGCCgaCGUGGCCgCCggugucGGcACCGgCGCGa -3'
miRNA:   3'- -CCGGg-GUACCGGaGGa-----CC-UGGC-GCGC- -5'
19010 3' -63.7 NC_004684.1 + 60292 0.67 0.307375
Target:  5'- uGGCCCgGUccucggcGGCCUCCaGGGCCucggcaauGCGUu -3'
miRNA:   3'- -CCGGGgUA-------CCGGAGGaCCUGG--------CGCGc -5'
19010 3' -63.7 NC_004684.1 + 63122 0.67 0.30385
Target:  5'- aGGCCCUugcuggcgaugGUGGUgguggccgagugcggCUCCUGcGcGCCGCGCa -3'
miRNA:   3'- -CCGGGG-----------UACCG---------------GAGGAC-C-UGGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 24135 0.67 0.301052
Target:  5'- cGGCgaCAUGGCCgugcucUCC-GGcCCGCGCGc -3'
miRNA:   3'- -CCGggGUACCGG------AGGaCCuGGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 65751 0.67 0.300356
Target:  5'- uGGCCUCGcgggcguUGGCCgccgcgcgCCggUGGGCgCGCGCa -3'
miRNA:   3'- -CCGGGGU-------ACCGGa-------GG--ACCUG-GCGCGc -5'
19010 3' -63.7 NC_004684.1 + 58622 0.68 0.287361
Target:  5'- cGG-CCCGUGGCgg-CUGGuGCCGCGCu -3'
miRNA:   3'- -CCgGGGUACCGgagGACC-UGGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 5939 0.68 0.267751
Target:  5'- uGGCCaCCGggcGGUCcaaCCUGG-CCGCGCc -3'
miRNA:   3'- -CCGG-GGUa--CCGGa--GGACCuGGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 10499 0.68 0.267751
Target:  5'- cGGCCU--UGGCCUCCUcgccaaGGugCGgGUGc -3'
miRNA:   3'- -CCGGGguACCGGAGGA------CCugGCgCGC- -5'
19010 3' -63.7 NC_004684.1 + 753 0.68 0.267751
Target:  5'- cGCCCUGgcGGCgCUCCUGGAcaCCGC-CGa -3'
miRNA:   3'- cCGGGGUa-CCG-GAGGACCU--GGCGcGC- -5'
19010 3' -63.7 NC_004684.1 + 12730 0.68 0.260836
Target:  5'- aGGCCguggaCCA-GGCCgaggucgacgcccUCUUGGcCCGCGCGg -3'
miRNA:   3'- -CCGG-----GGUaCCGG-------------AGGACCuGGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 45221 0.68 0.260836
Target:  5'- cGCCgCCGUGGCCcugcggugcUCCUcGGugaugccauggauGCCGCGCu -3'
miRNA:   3'- cCGG-GGUACCGG---------AGGA-CC-------------UGGCGCGc -5'
19010 3' -63.7 NC_004684.1 + 45138 0.68 0.255288
Target:  5'- cGGUCCCAUGcucgcGCCUgCgcguuGAUCGCGCGg -3'
miRNA:   3'- -CCGGGGUAC-----CGGAgGac---CUGGCGCGC- -5'
19010 3' -63.7 NC_004684.1 + 7902 0.68 0.255288
Target:  5'- uGCUCCGUuggGGCCg-CUGG-CCGCGCa -3'
miRNA:   3'- cCGGGGUA---CCGGagGACCuGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.