miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19011 3' -57.6 NC_004684.1 + 52707 0.66 0.645711
Target:  5'- ---cGCGCCcgu-CGGCCUCGCCa-- -3'
miRNA:   3'- guguCGCGGcauuGCCGGAGUGGcuc -5'
19011 3' -57.6 NC_004684.1 + 58256 0.66 0.645711
Target:  5'- uGCcGCGCCGaGGCGGUCgaacggUACCGGu -3'
miRNA:   3'- gUGuCGCGGCaUUGCCGGa-----GUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 14211 0.66 0.635034
Target:  5'- aGCGGCGCgGU--CGGCCUguCCccgGAGg -3'
miRNA:   3'- gUGUCGCGgCAuuGCCGGAguGG---CUC- -5'
19011 3' -57.6 NC_004684.1 + 40448 0.66 0.635034
Target:  5'- aGCGGUGCCcaGGCGGCCgccuGCuCGGGg -3'
miRNA:   3'- gUGUCGCGGcaUUGCCGGag--UG-GCUC- -5'
19011 3' -57.6 NC_004684.1 + 1603 0.66 0.623288
Target:  5'- gCACGGCaucggucGCCGUGcGCGcGCC-CACCGGc -3'
miRNA:   3'- -GUGUCG-------CGGCAU-UGC-CGGaGUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 41032 0.67 0.613683
Target:  5'- -cCGGUGCCGUugcccGACGGaaUgGCCGAGc -3'
miRNA:   3'- guGUCGCGGCA-----UUGCCggAgUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 43615 0.67 0.613683
Target:  5'- aACAGC-CCGgccACGGUgUgGCCGAGc -3'
miRNA:   3'- gUGUCGcGGCau-UGCCGgAgUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 11876 0.67 0.613683
Target:  5'- gGCGGCGCUG--GCGGUgaacaCACCGGGa -3'
miRNA:   3'- gUGUCGCGGCauUGCCGga---GUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 43743 0.67 0.613683
Target:  5'- gCGCAGCGCCu---CGGCUgacggUACCGGc -3'
miRNA:   3'- -GUGUCGCGGcauuGCCGGa----GUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 28246 0.67 0.603026
Target:  5'- gCACAGCGCgGUGGaccCGGCCagccuggUGCgCGAGg -3'
miRNA:   3'- -GUGUCGCGgCAUU---GCCGGa------GUG-GCUC- -5'
19011 3' -57.6 NC_004684.1 + 19415 0.67 0.603026
Target:  5'- -cCGGuCGCCaGUu-CGGCCUCugCGAa -3'
miRNA:   3'- guGUC-GCGG-CAuuGCCGGAGugGCUc -5'
19011 3' -57.6 NC_004684.1 + 7453 0.67 0.603026
Target:  5'- gCACAacGCGCaCGUGG-GGCCggaCACCGAc -3'
miRNA:   3'- -GUGU--CGCG-GCAUUgCCGGa--GUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 25201 0.67 0.603026
Target:  5'- --aGGCGCUGgcACcggguGGCUUCACCGGc -3'
miRNA:   3'- gugUCGCGGCauUG-----CCGGAGUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 15088 0.67 0.603026
Target:  5'- -uCGGCGCgGUGGCcgcccuggaGGCCgaccuugccgUCACCGGGa -3'
miRNA:   3'- guGUCGCGgCAUUG---------CCGG----------AGUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 30895 0.67 0.592392
Target:  5'- -uCAGCGUCc---CGGCCUUGCCGAu -3'
miRNA:   3'- guGUCGCGGcauuGCCGGAGUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 24484 0.67 0.592392
Target:  5'- gGCGGCGUUcgucgucagGUGGCGGUCUCggugccagagGCCGGGc -3'
miRNA:   3'- gUGUCGCGG---------CAUUGCCGGAG----------UGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 66544 0.67 0.592392
Target:  5'- gCACGGCGguaggCGUugUGcGCCUCACCGGa -3'
miRNA:   3'- -GUGUCGCg----GCAuuGC-CGGAGUGGCUc -5'
19011 3' -57.6 NC_004684.1 + 35449 0.67 0.592392
Target:  5'- gACAGCGggcgaCCGUuGCGGCCggGCCGcGa -3'
miRNA:   3'- gUGUCGC-----GGCAuUGCCGGagUGGCuC- -5'
19011 3' -57.6 NC_004684.1 + 22142 0.67 0.592392
Target:  5'- -cCAGCGCgGcauccAUGGCaUCACCGAGg -3'
miRNA:   3'- guGUCGCGgCau---UGCCGgAGUGGCUC- -5'
19011 3' -57.6 NC_004684.1 + 67006 0.67 0.58179
Target:  5'- cCACGGCGgugauccugaCCGgcaccacGAUGGCCUggcCACCGAGc -3'
miRNA:   3'- -GUGUCGC----------GGCa------UUGCCGGA---GUGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.