miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19012 5' -57.9 NC_004684.1 + 49691 0.67 0.582622
Target:  5'- aCGGuGUCCAgGGcACCGGgcaCGCGCucgGCg -3'
miRNA:   3'- -GUC-CAGGUgCU-UGGCCa--GCGCGca-CG- -5'
19012 5' -57.9 NC_004684.1 + 14493 0.67 0.582622
Target:  5'- -cGGUaCCAC--GCCGGUCGC-CGgugGCa -3'
miRNA:   3'- guCCA-GGUGcuUGGCCAGCGcGCa--CG- -5'
19012 5' -57.9 NC_004684.1 + 19099 0.67 0.582622
Target:  5'- -uGGUgCGCGAagGCCGGUgG-GaCGUGCg -3'
miRNA:   3'- guCCAgGUGCU--UGGCCAgCgC-GCACG- -5'
19012 5' -57.9 NC_004684.1 + 52040 0.67 0.582622
Target:  5'- ---cUCCGCGAuggcgacaaACCGGUUGUGCGUa- -3'
miRNA:   3'- guccAGGUGCU---------UGGCCAGCGCGCAcg -5'
19012 5' -57.9 NC_004684.1 + 46109 0.68 0.561783
Target:  5'- gCAGa--UACG-GCCGGgCGCGCGUGCc -3'
miRNA:   3'- -GUCcagGUGCuUGGCCaGCGCGCACG- -5'
19012 5' -57.9 NC_004684.1 + 29846 0.68 0.561783
Target:  5'- cCGGGUCCACcGGCgGGUCaucgccgccGCaGuCGUGCa -3'
miRNA:   3'- -GUCCAGGUGcUUGgCCAG---------CG-C-GCACG- -5'
19012 5' -57.9 NC_004684.1 + 48768 0.68 0.551438
Target:  5'- gAGGUCCACc-GCUGGUCGCccaGUcGCu -3'
miRNA:   3'- gUCCAGGUGcuUGGCCAGCGcg-CA-CG- -5'
19012 5' -57.9 NC_004684.1 + 19563 0.68 0.551438
Target:  5'- cCAGGUCUcCGGGCCuGG-CGU-CGUGCa -3'
miRNA:   3'- -GUCCAGGuGCUUGG-CCaGCGcGCACG- -5'
19012 5' -57.9 NC_004684.1 + 26679 0.68 0.541151
Target:  5'- uCGGGgCCAuCGucaaccuGCUGGU-GCGCGUGCu -3'
miRNA:   3'- -GUCCaGGU-GCu------UGGCCAgCGCGCACG- -5'
19012 5' -57.9 NC_004684.1 + 62391 0.68 0.541151
Target:  5'- aCAGGUCCACcuucgcCCGGUaCGuCGCGgagucgGCc -3'
miRNA:   3'- -GUCCAGGUGcuu---GGCCA-GC-GCGCa-----CG- -5'
19012 5' -57.9 NC_004684.1 + 59650 0.68 0.53093
Target:  5'- uCAGGUCCcccauGCGcGCCaGUCGCGCa--- -3'
miRNA:   3'- -GUCCAGG-----UGCuUGGcCAGCGCGcacg -5'
19012 5' -57.9 NC_004684.1 + 65766 0.68 0.52078
Target:  5'- -uGGccgCCGCGcGCCGGUgggCGCGCGcacgGCg -3'
miRNA:   3'- guCCa--GGUGCuUGGCCA---GCGCGCa---CG- -5'
19012 5' -57.9 NC_004684.1 + 27373 0.68 0.52078
Target:  5'- aAGG-CCACcaucgcGCCGGa-GCGCGUGCu -3'
miRNA:   3'- gUCCaGGUGcu----UGGCCagCGCGCACG- -5'
19012 5' -57.9 NC_004684.1 + 2853 0.69 0.497734
Target:  5'- -uGGaCCACGGGuucCUGGUCGCGCcggacgaccugcugGUGCg -3'
miRNA:   3'- guCCaGGUGCUU---GGCCAGCGCG--------------CACG- -5'
19012 5' -57.9 NC_004684.1 + 36474 0.69 0.480998
Target:  5'- aAGGUCCACGccugcggcauGCCGGUCG-GUGUc- -3'
miRNA:   3'- gUCCAGGUGCu---------UGGCCAGCgCGCAcg -5'
19012 5' -57.9 NC_004684.1 + 52360 0.69 0.452155
Target:  5'- --cGUCCAgGAGCCGGUCG-GCGa-- -3'
miRNA:   3'- gucCAGGUgCUUGGCCAGCgCGCacg -5'
19012 5' -57.9 NC_004684.1 + 1752 0.7 0.442752
Target:  5'- gUAGGUCg--GGACCGGagcugCGCGCGUGg -3'
miRNA:   3'- -GUCCAGgugCUUGGCCa----GCGCGCACg -5'
19012 5' -57.9 NC_004684.1 + 58174 0.7 0.43346
Target:  5'- uCGGGUCCugGcccacCCGGUCaCGCGcccacUGCg -3'
miRNA:   3'- -GUCCAGGugCuu---GGCCAGcGCGC-----ACG- -5'
19012 5' -57.9 NC_004684.1 + 5040 0.7 0.424283
Target:  5'- gAGGUgCGCaGGCUGGcgCGCGCuGUGCu -3'
miRNA:   3'- gUCCAgGUGcUUGGCCa-GCGCG-CACG- -5'
19012 5' -57.9 NC_004684.1 + 64869 0.7 0.397463
Target:  5'- gGGGUgCGCGuuguCCGGUCGCGCc--- -3'
miRNA:   3'- gUCCAgGUGCuu--GGCCAGCGCGcacg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.