miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19013 3' -54.7 NC_004684.1 + 33576 0.66 0.81962
Target:  5'- -aUCCCG--UGGUCGAccacgauGUUCUacaugaaugugGGGCCa -3'
miRNA:   3'- cgAGGGCuuACCAGCU-------CAAGG-----------UCCGG- -5'
19013 3' -54.7 NC_004684.1 + 44722 0.67 0.763143
Target:  5'- cCUCCUGcGGUGGUUGuGUUUucggucgguaUAGGCCg -3'
miRNA:   3'- cGAGGGC-UUACCAGCuCAAG----------GUCCGG- -5'
19013 3' -54.7 NC_004684.1 + 26048 0.67 0.763143
Target:  5'- gGCggCCaGGGcGG-CGAGUUCgAGGCCa -3'
miRNA:   3'- -CGa-GGgCUUaCCaGCUCAAGgUCCGG- -5'
19013 3' -54.7 NC_004684.1 + 51585 0.67 0.763143
Target:  5'- gGCggcgaCCGggUGGUCcaaGGUcUCCAGGUg -3'
miRNA:   3'- -CGag---GGCuuACCAGc--UCA-AGGUCCGg -5'
19013 3' -54.7 NC_004684.1 + 7600 0.67 0.773092
Target:  5'- --aCCCG-GUGGUCGuGUacuucaUCCGGuGCCc -3'
miRNA:   3'- cgaGGGCuUACCAGCuCA------AGGUC-CGG- -5'
19013 3' -54.7 NC_004684.1 + 20271 0.67 0.782901
Target:  5'- cGUUCCCGGccccuGUGGUCGAca-CCAGcgagaagugcGCCg -3'
miRNA:   3'- -CGAGGGCU-----UACCAGCUcaaGGUC----------CGG- -5'
19013 3' -54.7 NC_004684.1 + 20818 0.66 0.792559
Target:  5'- cGCga-CGAcUGGgcuGAGUUCCuGGCCa -3'
miRNA:   3'- -CGaggGCUuACCag-CUCAAGGuCCGG- -5'
19013 3' -54.7 NC_004684.1 + 9262 0.66 0.811382
Target:  5'- uGCUcaucCCCGAGcUGGccgaugUCGAGUUCCcgacGCCg -3'
miRNA:   3'- -CGA----GGGCUU-ACC------AGCUCAAGGuc--CGG- -5'
19013 3' -54.7 NC_004684.1 + 49205 0.66 0.811382
Target:  5'- uGCUCggUCGGccaGUcGGUCG-GUgCCGGGCCg -3'
miRNA:   3'- -CGAG--GGCU---UA-CCAGCuCAaGGUCCGG- -5'
19013 3' -54.7 NC_004684.1 + 12962 0.67 0.738758
Target:  5'- uGCUCCCGccgaccGGcggcaggcaacacCGAGcgCCGGGCCg -3'
miRNA:   3'- -CGAGGGCuua---CCa------------GCUCaaGGUCCGG- -5'
19013 3' -54.7 NC_004684.1 + 63692 0.68 0.700049
Target:  5'- uCUCCUGugguuGUGGUUGucgugcgggaggcGGUgCCGGGCCa -3'
miRNA:   3'- cGAGGGCu----UACCAGC-------------UCAaGGUCCGG- -5'
19013 3' -54.7 NC_004684.1 + 7675 0.68 0.679799
Target:  5'- cGCUCUgGcauUGGgacaacCGGGcaUUCCAGGCCg -3'
miRNA:   3'- -CGAGGgCuu-ACCa-----GCUC--AAGGUCCGG- -5'
19013 3' -54.7 NC_004684.1 + 12839 0.72 0.459221
Target:  5'- uGCUgCCGAcGUGGUCGcGgaggCCgAGGCCg -3'
miRNA:   3'- -CGAgGGCU-UACCAGCuCaa--GG-UCCGG- -5'
19013 3' -54.7 NC_004684.1 + 28101 0.71 0.51961
Target:  5'- cGCa-CCGggUGGUgCG-GUUCgAGGCCu -3'
miRNA:   3'- -CGagGGCuuACCA-GCuCAAGgUCCGG- -5'
19013 3' -54.7 NC_004684.1 + 55563 0.7 0.582878
Target:  5'- cGCcguggCCCG-GUGGcCGGGggUCCAGGCa -3'
miRNA:   3'- -CGa----GGGCuUACCaGCUCa-AGGUCCGg -5'
19013 3' -54.7 NC_004684.1 + 51161 0.7 0.615142
Target:  5'- aCUCCuCGGuGUGGcCGAuGcgCCGGGCCa -3'
miRNA:   3'- cGAGG-GCU-UACCaGCU-CaaGGUCCGG- -5'
19013 3' -54.7 NC_004684.1 + 3091 0.69 0.669074
Target:  5'- uGCUCCCGGuuuc-CGAGcugUUCGGGCCc -3'
miRNA:   3'- -CGAGGGCUuaccaGCUCa--AGGUCCGG- -5'
19013 3' -54.7 NC_004684.1 + 6297 0.69 0.669074
Target:  5'- aGCUCCUGGuccaGGUCca---CCAGGCCg -3'
miRNA:   3'- -CGAGGGCUua--CCAGcucaaGGUCCGG- -5'
19013 3' -54.7 NC_004684.1 + 5528 0.68 0.679799
Target:  5'- cCUCCgaCGAGUGGUCccg--CCAGGCUg -3'
miRNA:   3'- cGAGG--GCUUACCAGcucaaGGUCCGG- -5'
19013 3' -54.7 NC_004684.1 + 24666 0.68 0.679799
Target:  5'- cUUCgCCGAcggcGGUgaGGUUCCAGGCCu -3'
miRNA:   3'- cGAG-GGCUua--CCAgcUCAAGGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.