miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19013 5' -63.7 NC_004684.1 + 40477 0.66 0.362487
Target:  5'- aCCGGCCUgccgaaGGCC-GcCACCGCCGaGGc-- -3'
miRNA:   3'- -GGUCGGG------CCGGaC-GUGGCGGC-CCuug -5'
19013 5' -63.7 NC_004684.1 + 36899 0.66 0.354537
Target:  5'- aCCAGCUCggacuGGCCggugGCAUCGCCcggucgaggccgGGuGGACa -3'
miRNA:   3'- -GGUCGGG-----CCGGa---CGUGGCGG------------CC-CUUG- -5'
19013 5' -63.7 NC_004684.1 + 54263 0.66 0.354537
Target:  5'- aCAGCUCcucaGCCaGCGCCGCCacccggccGGGggUg -3'
miRNA:   3'- gGUCGGGc---CGGaCGUGGCGG--------CCCuuG- -5'
19013 5' -63.7 NC_004684.1 + 45312 0.66 0.354537
Target:  5'- aCCAGCaCCaagcGCCgcauggacGCGCUGCCGcuGGAGCg -3'
miRNA:   3'- -GGUCG-GGc---CGGa-------CGUGGCGGC--CCUUG- -5'
19013 5' -63.7 NC_004684.1 + 6746 0.66 0.354537
Target:  5'- gCUGGCCCGGa----GCCGUCGGGuGCa -3'
miRNA:   3'- -GGUCGGGCCggacgUGGCGGCCCuUG- -5'
19013 5' -63.7 NC_004684.1 + 53784 0.66 0.354537
Target:  5'- cCCAGaCCGGC--GCGgCGCUGGGAu- -3'
miRNA:   3'- -GGUCgGGCCGgaCGUgGCGGCCCUug -5'
19013 5' -63.7 NC_004684.1 + 57820 0.66 0.353748
Target:  5'- aCGGCCUGGUCccggcggUGCugGCCGCCGGu--- -3'
miRNA:   3'- gGUCGGGCCGG-------ACG--UGGCGGCCcuug -5'
19013 5' -63.7 NC_004684.1 + 60461 0.66 0.353748
Target:  5'- cCCGGCaugcccaaccugaCCGaCCUgGCACCGCUGGccGAACg -3'
miRNA:   3'- -GGUCG-------------GGCcGGA-CGUGGCGGCC--CUUG- -5'
19013 5' -63.7 NC_004684.1 + 8847 0.66 0.349826
Target:  5'- aCUGGCCaugGGCCUggacgugucgccugaGCGCCuGCUGGGAc- -3'
miRNA:   3'- -GGUCGGg--CCGGA---------------CGUGG-CGGCCCUug -5'
19013 5' -63.7 NC_004684.1 + 60943 0.66 0.346711
Target:  5'- ---uCCCGGCCgacauCGCCGCCGuGGACa -3'
miRNA:   3'- ggucGGGCCGGac---GUGGCGGCcCUUG- -5'
19013 5' -63.7 NC_004684.1 + 12056 0.66 0.346711
Target:  5'- gCCGGUCgCGGUgUGCGCCGCa-GGuGCc -3'
miRNA:   3'- -GGUCGG-GCCGgACGUGGCGgcCCuUG- -5'
19013 5' -63.7 NC_004684.1 + 54363 0.66 0.346711
Target:  5'- cCCGGCCgGGUggcgGCGCUGgCUGaGGAGCu -3'
miRNA:   3'- -GGUCGGgCCGga--CGUGGC-GGC-CCUUG- -5'
19013 5' -63.7 NC_004684.1 + 48640 0.66 0.346711
Target:  5'- cCCAgGCCCagauGCgCUGCACCgcGCCGGaGAGg -3'
miRNA:   3'- -GGU-CGGGc---CG-GACGUGG--CGGCC-CUUg -5'
19013 5' -63.7 NC_004684.1 + 8617 0.66 0.346711
Target:  5'- -aAGCCCGGugcaCCgGCACCGCCGa---- -3'
miRNA:   3'- ggUCGGGCC----GGaCGUGGCGGCccuug -5'
19013 5' -63.7 NC_004684.1 + 57276 0.66 0.345935
Target:  5'- aCAGCUCGGCCUgugacggcgagccGCACC-CCGGc--- -3'
miRNA:   3'- gGUCGGGCCGGA-------------CGUGGcGGCCcuug -5'
19013 5' -63.7 NC_004684.1 + 19775 0.66 0.339009
Target:  5'- cUCGGCCaGGCCuUGcCGCCgcGCCGGuaGAGCg -3'
miRNA:   3'- -GGUCGGgCCGG-AC-GUGG--CGGCC--CUUG- -5'
19013 5' -63.7 NC_004684.1 + 38494 0.66 0.339009
Target:  5'- gCCAGguuCUCGGUCUccaCGCCGCCGGuAGCg -3'
miRNA:   3'- -GGUC---GGGCCGGAc--GUGGCGGCCcUUG- -5'
19013 5' -63.7 NC_004684.1 + 63988 0.66 0.339009
Target:  5'- cCCGGuaCCUGGaCCaccugGCACCGCUGGGc-- -3'
miRNA:   3'- -GGUC--GGGCC-GGa----CGUGGCGGCCCuug -5'
19013 5' -63.7 NC_004684.1 + 41976 0.66 0.338246
Target:  5'- gCCAGCgcguucaugucgCgGGCCUGCGuCCaguaccagaccacGCCGaGGAACg -3'
miRNA:   3'- -GGUCG------------GgCCGGACGU-GG-------------CGGC-CCUUG- -5'
19013 5' -63.7 NC_004684.1 + 35515 0.67 0.331432
Target:  5'- -gAGCaCCGGCgcuaCUGCACCGagugCGGGcACg -3'
miRNA:   3'- ggUCG-GGCCG----GACGUGGCg---GCCCuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.