miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19014 5' -64.2 NC_004684.1 + 5473 0.66 0.349586
Target:  5'- gCC-GUGGC-CCGCaCCCCGcGauagaGGUGGUu -3'
miRNA:   3'- -GGaCGCCGuGGCG-GGGGC-Cg----CCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 15923 0.66 0.349586
Target:  5'- gCCUaccCGGCACCGgagCCUGGCGG-GGCc -3'
miRNA:   3'- -GGAc--GCCGUGGCgg-GGGCCGCCaUCG- -5'
19014 5' -64.2 NC_004684.1 + 19760 0.66 0.349586
Target:  5'- aCCUgcGCGGCcuGCCgguGCCCgCCGGgGGcgacaagaUGGCg -3'
miRNA:   3'- -GGA--CGCCG--UGG---CGGG-GGCCgCC--------AUCG- -5'
19014 5' -64.2 NC_004684.1 + 62248 0.66 0.349586
Target:  5'- --cGCGGCuggucCUGCCCgCucauGCGGUGGCc -3'
miRNA:   3'- ggaCGCCGu----GGCGGGgGc---CGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 9446 0.66 0.341925
Target:  5'- gCCgcaGCGaGCACCGCa---GGCGGUcGGCa -3'
miRNA:   3'- -GGa--CGC-CGUGGCGggggCCGCCA-UCG- -5'
19014 5' -64.2 NC_004684.1 + 30626 0.66 0.341925
Target:  5'- --cGuCGGCACCGggcgcggCCCUGGCGGcgucAGCg -3'
miRNA:   3'- ggaC-GCCGUGGCg------GGGGCCGCCa---UCG- -5'
19014 5' -64.2 NC_004684.1 + 40566 0.66 0.341925
Target:  5'- gCUG-GGCGaaGCCCUCGGUgaucuccgggucGGUGGUg -3'
miRNA:   3'- gGACgCCGUggCGGGGGCCG------------CCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 52366 0.66 0.341925
Target:  5'- aCUcGaUGGUGCCGUCCCagccgauccaggCGGCGGUcaGGCa -3'
miRNA:   3'- gGA-C-GCCGUGGCGGGG------------GCCGCCA--UCG- -5'
19014 5' -64.2 NC_004684.1 + 53043 0.66 0.341925
Target:  5'- aCCUGC-GCGgUGCCCagcaCGGUGGUGu- -3'
miRNA:   3'- -GGACGcCGUgGCGGGg---GCCGCCAUcg -5'
19014 5' -64.2 NC_004684.1 + 47355 0.66 0.334387
Target:  5'- aCCa--GGcCACgGUaggaCCCGGCGGUAGUg -3'
miRNA:   3'- -GGacgCC-GUGgCGg---GGGCCGCCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 61503 0.66 0.334387
Target:  5'- --aGCGcCGCCGCCaCCCGGUcaGGcUGGUg -3'
miRNA:   3'- ggaCGCcGUGGCGG-GGGCCG--CC-AUCG- -5'
19014 5' -64.2 NC_004684.1 + 12663 0.66 0.334387
Target:  5'- --cGCGaGCugCGCUCgCUGGUGGaGGCc -3'
miRNA:   3'- ggaCGC-CGugGCGGG-GGCCGCCaUCG- -5'
19014 5' -64.2 NC_004684.1 + 46420 0.66 0.334387
Target:  5'- aCCUGCGcCGCCGCUCCgaccgGGuuGUAGUc -3'
miRNA:   3'- -GGACGCcGUGGCGGGGg----CCgcCAUCG- -5'
19014 5' -64.2 NC_004684.1 + 38813 0.66 0.334387
Target:  5'- aCCgGCaGGCAgCCGCCgcacaCCGGUGGcggGGUg -3'
miRNA:   3'- -GGaCG-CCGU-GGCGGg----GGCCGCCa--UCG- -5'
19014 5' -64.2 NC_004684.1 + 4152 0.67 0.329922
Target:  5'- --cGCGGaCACCguggacgcgaucaugGCCcgguugcgCCCGGCGGgcGCg -3'
miRNA:   3'- ggaCGCC-GUGG---------------CGG--------GGGCCGCCauCG- -5'
19014 5' -64.2 NC_004684.1 + 11505 0.67 0.32697
Target:  5'- gCCUGCugggacucccGGCACCGCU--CGGUGGgccugGGCc -3'
miRNA:   3'- -GGACG----------CCGUGGCGGggGCCGCCa----UCG- -5'
19014 5' -64.2 NC_004684.1 + 28182 0.67 0.32697
Target:  5'- gCgaGCGGUACCccgaCCCCUucugGGCGGUGccGCu -3'
miRNA:   3'- -GgaCGCCGUGGc---GGGGG----CCGCCAU--CG- -5'
19014 5' -64.2 NC_004684.1 + 57228 0.67 0.32697
Target:  5'- gCCUGcCGGacaaaCGCCCCaccugGGCGGgcGGCa -3'
miRNA:   3'- -GGAC-GCCgug--GCGGGGg----CCGCCa-UCG- -5'
19014 5' -64.2 NC_004684.1 + 44733 0.67 0.324769
Target:  5'- uUCUGCGGCcuucuCCaggucuuuggggucGCCgCUGGCGGcGGCc -3'
miRNA:   3'- -GGACGCCGu----GG--------------CGGgGGCCGCCaUCG- -5'
19014 5' -64.2 NC_004684.1 + 37332 0.67 0.324769
Target:  5'- gCCgggagGcCGGUACCaggcucacaggaucGCCCCCGGUGucuucugcuGUAGCu -3'
miRNA:   3'- -GGa----C-GCCGUGG--------------CGGGGGCCGC---------CAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.