miRNA display CGI


Results 21 - 40 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19015 3' -62.6 NC_004684.1 + 40063 0.66 0.415035
Target:  5'- cUCGUCGUuggUCAGCGUGC-GGUCgcagauaccgcaGCGGCc -3'
miRNA:   3'- -AGCGGCG---GGUCGCGCGaCUAG------------CGCCG- -5'
19015 3' -62.6 NC_004684.1 + 5882 0.66 0.415035
Target:  5'- -aGCaccaGCCUgaccggguggcGGCgGCGCUGAUCGC-GCa -3'
miRNA:   3'- agCGg---CGGG-----------UCG-CGCGACUAGCGcCG- -5'
19015 3' -62.6 NC_004684.1 + 13108 0.66 0.415035
Target:  5'- aCGCCGCCCcacCG-GCcag-CGCGGCa -3'
miRNA:   3'- aGCGGCGGGuc-GCgCGacuaGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 44586 0.66 0.415035
Target:  5'- cUGCCGgucgaCCAGCGUGUUGAagUCGCcaGCc -3'
miRNA:   3'- aGCGGCg----GGUCGCGCGACU--AGCGc-CG- -5'
19015 3' -62.6 NC_004684.1 + 22539 0.66 0.415035
Target:  5'- cUCGCUcuGCCCGGUGUGU---UCGcCGGUa -3'
miRNA:   3'- -AGCGG--CGGGUCGCGCGacuAGC-GCCG- -5'
19015 3' -62.6 NC_004684.1 + 20245 0.66 0.414154
Target:  5'- gCGCCgguacuacuuccgGCCCGGCGCGU---UCcCGGCc -3'
miRNA:   3'- aGCGG-------------CGGGUCGCGCGacuAGcGCCG- -5'
19015 3' -62.6 NC_004684.1 + 46704 0.66 0.412397
Target:  5'- -gGCgCGCCCugugcgAGCGCGCcaccgacauuacguUGAg-GCGGCg -3'
miRNA:   3'- agCG-GCGGG------UCGCGCG--------------ACUagCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 28771 0.66 0.406283
Target:  5'- --aCCGCCCAGaCG-GCUGAUCGacaccuagucCGGUc -3'
miRNA:   3'- agcGGCGGGUC-GCgCGACUAGC----------GCCG- -5'
19015 3' -62.6 NC_004684.1 + 41983 0.66 0.406283
Target:  5'- uUCuaUGCCC-GCGCGgUGGcCGCuGGCg -3'
miRNA:   3'- -AGcgGCGGGuCGCGCgACUaGCG-CCG- -5'
19015 3' -62.6 NC_004684.1 + 24184 0.66 0.406283
Target:  5'- cCGCCGCCCAaaauGC-CGgUGccUGCGGUg -3'
miRNA:   3'- aGCGGCGGGU----CGcGCgACuaGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 13792 0.66 0.406283
Target:  5'- gCGCC-UCCAGCGCGgUG-UCGCccGCa -3'
miRNA:   3'- aGCGGcGGGUCGCGCgACuAGCGc-CG- -5'
19015 3' -62.6 NC_004684.1 + 37145 0.66 0.406283
Target:  5'- gCGCCGCCaguucugggAGCGCGCcGAgggccacgUCGCGccgaGCa -3'
miRNA:   3'- aGCGGCGGg--------UCGCGCGaCU--------AGCGC----CG- -5'
19015 3' -62.6 NC_004684.1 + 15357 0.66 0.406283
Target:  5'- uUUGUCGCCaucgcggagcGCGCGCUGGUgauCGGCu -3'
miRNA:   3'- -AGCGGCGGgu--------CGCGCGACUAgc-GCCG- -5'
19015 3' -62.6 NC_004684.1 + 61490 0.66 0.406283
Target:  5'- gUCGCCGCgcaggCGGCgGCGCUcGAUgCGCGccaGCa -3'
miRNA:   3'- -AGCGGCGg----GUCG-CGCGA-CUA-GCGC---CG- -5'
19015 3' -62.6 NC_004684.1 + 44398 0.66 0.406283
Target:  5'- -aGUCgGCCCAgGC-CGUUGAUCaGCGGUu -3'
miRNA:   3'- agCGG-CGGGU-CGcGCGACUAG-CGCCG- -5'
19015 3' -62.6 NC_004684.1 + 61460 0.66 0.406283
Target:  5'- -gGaCCGCCCGGUG-GCcag-CGCGGCc -3'
miRNA:   3'- agC-GGCGGGUCGCgCGacuaGCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 47945 0.66 0.406283
Target:  5'- cCGCCGCCCGGgcauggGCGCacggUGGuuUCGCagaGGCc -3'
miRNA:   3'- aGCGGCGGGUCg-----CGCG----ACU--AGCG---CCG- -5'
19015 3' -62.6 NC_004684.1 + 44952 0.66 0.405415
Target:  5'- aUCGCCGCCgcgccgaCGGCgaugGCGUUGAggcccaGCGGg -3'
miRNA:   3'- -AGCGGCGG-------GUCG----CGCGACUag----CGCCg -5'
19015 3' -62.6 NC_004684.1 + 49266 0.66 0.405415
Target:  5'- cUUGCCGCCCAGCaGCagguagccguacuGCUuaccGGagGUGGCc -3'
miRNA:   3'- -AGCGGCGGGUCG-CG-------------CGA----CUagCGCCG- -5'
19015 3' -62.6 NC_004684.1 + 55735 0.66 0.397649
Target:  5'- aCGuuGgCCGcCGUGCUGG-CGUGGCc -3'
miRNA:   3'- aGCggCgGGUcGCGCGACUaGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.