miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19015 5' -57.2 NC_004684.1 + 22197 0.67 0.593604
Target:  5'- -uGCCGCug-GaGCGCGGCggggUGGUGGc -3'
miRNA:   3'- auCGGUGcuaC-CGCGCCGa---ACUACCc -5'
19015 5' -57.2 NC_004684.1 + 37533 0.67 0.572191
Target:  5'- gAGCUgcGCGAUGGUGacCGGCgcguUGGGg -3'
miRNA:   3'- aUCGG--UGCUACCGC--GCCGaacuACCC- -5'
19015 5' -57.2 NC_004684.1 + 56823 0.67 0.561551
Target:  5'- gUGGCCAuCGAccacgaccaccUGGCGCaGC-UGGUGGa -3'
miRNA:   3'- -AUCGGU-GCU-----------ACCGCGcCGaACUACCc -5'
19015 5' -57.2 NC_004684.1 + 42652 0.67 0.561551
Target:  5'- -cGCCAgCGAUGaGCGCGGUg-GA-GGGc -3'
miRNA:   3'- auCGGU-GCUAC-CGCGCCGaaCUaCCC- -5'
19015 5' -57.2 NC_004684.1 + 33875 0.67 0.561551
Target:  5'- cGGCCuaccagGCGGUGcGgGCGGUgccGGUGGGc -3'
miRNA:   3'- aUCGG------UGCUAC-CgCGCCGaa-CUACCC- -5'
19015 5' -57.2 NC_004684.1 + 16778 0.67 0.561551
Target:  5'- gAGCgGgGAccaGGUGCGGCgcgucgugUGGUGGGc -3'
miRNA:   3'- aUCGgUgCUa--CCGCGCCGa-------ACUACCC- -5'
19015 5' -57.2 NC_004684.1 + 5393 0.67 0.561551
Target:  5'- -cGUCGCGAuUGuGCGCGGCgggUGcgGGu -3'
miRNA:   3'- auCGGUGCU-AC-CGCGCCGa--ACuaCCc -5'
19015 5' -57.2 NC_004684.1 + 25064 0.67 0.561551
Target:  5'- gUGGCCAgGgcGGC-CGGgUUGGUGGc -3'
miRNA:   3'- -AUCGGUgCuaCCGcGCCgAACUACCc -5'
19015 5' -57.2 NC_004684.1 + 62958 0.68 0.540443
Target:  5'- -cGCCgACGAUGGUgGCGuGCUcGGUGGu -3'
miRNA:   3'- auCGG-UGCUACCG-CGC-CGAaCUACCc -5'
19015 5' -57.2 NC_004684.1 + 28062 0.68 0.529989
Target:  5'- cGGCCAacCGGccugGGCGCGGCaac-UGGGg -3'
miRNA:   3'- aUCGGU--GCUa---CCGCGCCGaacuACCC- -5'
19015 5' -57.2 NC_004684.1 + 30486 0.68 0.51961
Target:  5'- cGGCUAUGAcccgagcgUGGgGCGGCUggcGcUGGGg -3'
miRNA:   3'- aUCGGUGCU--------ACCgCGCCGAa--CuACCC- -5'
19015 5' -57.2 NC_004684.1 + 23211 0.68 0.51961
Target:  5'- aGGCCGcCGGUGGCGaCGGCggguuccUGAaaUGGc -3'
miRNA:   3'- aUCGGU-GCUACCGC-GCCGa------ACU--ACCc -5'
19015 5' -57.2 NC_004684.1 + 7811 0.68 0.509311
Target:  5'- --aCCG-GGUGGUGCGGCU-GAUGGa -3'
miRNA:   3'- aucGGUgCUACCGCGCCGAaCUACCc -5'
19015 5' -57.2 NC_004684.1 + 64828 0.69 0.487972
Target:  5'- gGGCCAUGGUguccuccuugguaGGCG-GGUgguugUGGUGGGg -3'
miRNA:   3'- aUCGGUGCUA-------------CCGCgCCGa----ACUACCC- -5'
19015 5' -57.2 NC_004684.1 + 46597 0.69 0.472991
Target:  5'- cGGCgGCGAcGGCgGCGGUUUGGUacgagcgcaguucgcGGGg -3'
miRNA:   3'- aUCGgUGCUaCCG-CGCCGAACUA---------------CCC- -5'
19015 5' -57.2 NC_004684.1 + 5520 0.69 0.449517
Target:  5'- -cGCCcUGGUGGCGCaGC-UGGUGGa -3'
miRNA:   3'- auCGGuGCUACCGCGcCGaACUACCc -5'
19015 5' -57.2 NC_004684.1 + 36086 0.7 0.421103
Target:  5'- gAGCCGCGAUGGgaggcaaGCGcGC--GGUGGGu -3'
miRNA:   3'- aUCGGUGCUACCg------CGC-CGaaCUACCC- -5'
19015 5' -57.2 NC_004684.1 + 23768 0.7 0.402773
Target:  5'- gGGCCGUGG-GGCGCGGCgu--UGGGc -3'
miRNA:   3'- aUCGGUGCUaCCGCGCCGaacuACCC- -5'
19015 5' -57.2 NC_004684.1 + 66643 0.71 0.376247
Target:  5'- gUGGCCACGAUGGCcucgGCGGCggcccGGu -3'
miRNA:   3'- -AUCGGUGCUACCG----CGCCGaacuaCCc -5'
19015 5' -57.2 NC_004684.1 + 58560 0.71 0.36682
Target:  5'- aUGGCCagucggGCGAUGGCGUcguugcgGGuCUUGAUGGc -3'
miRNA:   3'- -AUCGG------UGCUACCGCG-------CC-GAACUACCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.