Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19016 | 3' | -63.4 | NC_004684.1 | + | 12743 | 0.71 | 0.165087 |
Target: 5'- gGCCG-AGGUCGaCGCCCUcuugGCCCGc-- -3' miRNA: 3'- gCGGCaUCCAGC-GCGGGA----CGGGCcau -5' |
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19016 | 3' | -63.4 | NC_004684.1 | + | 57297 | 0.66 | 0.374076 |
Target: 5'- aGCCGcaccccGGcCa-GCCCUGCCCGGUc -3' miRNA: 3'- gCGGCau----CCaGcgCGGGACGGGCCAu -5' |
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19016 | 3' | -63.4 | NC_004684.1 | + | 55030 | 0.66 | 0.365907 |
Target: 5'- aGCCGaAGGUggugcgcagUGUGCCCaGCgCGGUGa -3' miRNA: 3'- gCGGCaUCCA---------GCGCGGGaCGgGCCAU- -5' |
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19016 | 3' | -63.4 | NC_004684.1 | + | 36760 | 0.66 | 0.357862 |
Target: 5'- aCGCCGccaGGGcCGCGCCCggUGCCgacgcUGGUc -3' miRNA: 3'- -GCGGCa--UCCaGCGCGGG--ACGG-----GCCAu -5' |
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19016 | 3' | -63.4 | NC_004684.1 | + | 58325 | 0.66 | 0.342146 |
Target: 5'- aCGCCGggucauGG-CGCGCCCggugGCCCu--- -3' miRNA: 3'- -GCGGCau----CCaGCGCGGGa---CGGGccau -5' |
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19016 | 3' | -63.4 | NC_004684.1 | + | 51180 | 0.66 | 0.342146 |
Target: 5'- gCGCCGggccauGGaccgCGCGCCCUGgCCGu-- -3' miRNA: 3'- -GCGGCau----CCa---GCGCGGGACgGGCcau -5' |
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19016 | 3' | -63.4 | NC_004684.1 | + | 26420 | 0.67 | 0.326935 |
Target: 5'- gCGCUGgcagcgGGGuUCGcCGCCggugGCCCGGUGu -3' miRNA: 3'- -GCGGCa-----UCC-AGC-GCGGga--CGGGCCAU- -5' |
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19016 | 3' | -63.4 | NC_004684.1 | + | 37630 | 0.67 | 0.319519 |
Target: 5'- aCGCCGUcGGUgCGCugGCCauggccGCCCGGUc -3' miRNA: 3'- -GCGGCAuCCA-GCG--CGGga----CGGGCCAu -5' |
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19016 | 3' | -63.4 | NC_004684.1 | + | 45256 | 0.67 | 0.319519 |
Target: 5'- aGCCagcgcuGGUCGCgGCCCUugcGUCCGGUu -3' miRNA: 3'- gCGGcau---CCAGCG-CGGGA---CGGGCCAu -5' |
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19016 | 3' | -63.4 | NC_004684.1 | + | 15063 | 0.67 | 0.31223 |
Target: 5'- aCGCCGgaugAGGUCGaCGgCCUuaucgGCgCGGUGg -3' miRNA: 3'- -GCGGCa---UCCAGC-GCgGGA-----CGgGCCAU- -5' |
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19016 | 3' | -63.4 | NC_004684.1 | + | 51984 | 0.69 | 0.223285 |
Target: 5'- aCGgUGUcGGccaUCGCGCCCUGC-CGGUAg -3' miRNA: 3'- -GCgGCAuCC---AGCGCGGGACGgGCCAU- -5' |
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19016 | 3' | -63.4 | NC_004684.1 | + | 4176 | 0.68 | 0.25846 |
Target: 5'- gGCCc--GGUUGCGCCCggcggGCgCGGUGg -3' miRNA: 3'- gCGGcauCCAGCGCGGGa----CGgGCCAU- -5' |
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19016 | 3' | -63.4 | NC_004684.1 | + | 19574 | 0.68 | 0.264744 |
Target: 5'- gGCC-UGGcGUCGUGCaCCUGCCCaGUc -3' miRNA: 3'- gCGGcAUC-CAGCGCG-GGACGGGcCAu -5' |
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19016 | 3' | -63.4 | NC_004684.1 | + | 25000 | 0.68 | 0.271153 |
Target: 5'- uGCCcaacccGGUCGCGCUCaGCgCCGGUGc -3' miRNA: 3'- gCGGcau---CCAGCGCGGGaCG-GGCCAU- -5' |
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19016 | 3' | -63.4 | NC_004684.1 | + | 20226 | 0.67 | 0.298034 |
Target: 5'- uCGCC-UGGGU-GCGCCUggcGCgCCGGUAc -3' miRNA: 3'- -GCGGcAUCCAgCGCGGGa--CG-GGCCAU- -5' |
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19016 | 3' | -63.4 | NC_004684.1 | + | 22527 | 0.67 | 0.305069 |
Target: 5'- aCGCagGcAGGcCuCGCUCUGCCCGGUGu -3' miRNA: 3'- -GCGg-CaUCCaGcGCGGGACGGGCCAU- -5' |
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19016 | 3' | -63.4 | NC_004684.1 | + | 64861 | 0.67 | 0.31223 |
Target: 5'- uGUgGUGGGgggUGCGCgUUGUCCGGUc -3' miRNA: 3'- gCGgCAUCCa--GCGCGgGACGGGCCAu -5' |
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19016 | 3' | -63.4 | NC_004684.1 | + | 55573 | 0.66 | 0.357862 |
Target: 5'- uCGCCGgacagcGGcgcgcUCGCGCCCUucuccacggugGCCUGGUc -3' miRNA: 3'- -GCGGCau----CC-----AGCGCGGGA-----------CGGGCCAu -5' |
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19016 | 3' | -63.4 | NC_004684.1 | + | 48994 | 0.75 | 0.081089 |
Target: 5'- cCGCCGaaguagUAGGUCGUGCCCUGgaacuugCCGGUGa -3' miRNA: 3'- -GCGGC------AUCCAGCGCGGGACg------GGCCAU- -5' |
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19016 | 3' | -63.4 | NC_004684.1 | + | 27071 | 0.73 | 0.130775 |
Target: 5'- gCGCCG-AGGUCGUG-CCUGCCgGGc- -3' miRNA: 3'- -GCGGCaUCCAGCGCgGGACGGgCCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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