miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19016 3' -63.4 NC_004684.1 + 61194 0.67 0.291125
Target:  5'- gCGCCGgAGGccaUCGacauGUaCCUGCCCGGUGc -3'
miRNA:   3'- -GCGGCaUCC---AGCg---CG-GGACGGGCCAU- -5'
19016 3' -63.4 NC_004684.1 + 25000 0.68 0.271153
Target:  5'- uGCCcaacccGGUCGCGCUCaGCgCCGGUGc -3'
miRNA:   3'- gCGGcau---CCAGCGCGGGaCG-GGCCAU- -5'
19016 3' -63.4 NC_004684.1 + 19574 0.68 0.264744
Target:  5'- gGCC-UGGcGUCGUGCaCCUGCCCaGUc -3'
miRNA:   3'- gCGGcAUC-CAGCGCG-GGACGGGcCAu -5'
19016 3' -63.4 NC_004684.1 + 4176 0.68 0.25846
Target:  5'- gGCCc--GGUUGCGCCCggcggGCgCGGUGg -3'
miRNA:   3'- gCGGcauCCAGCGCGGGa----CGgGCCAU- -5'
19016 3' -63.4 NC_004684.1 + 25990 0.69 0.246256
Target:  5'- aCGCCaccgcgacgGUAGGUCGaauaGCCaucgGCCCGGa- -3'
miRNA:   3'- -GCGG---------CAUCCAGCg---CGGga--CGGGCCau -5'
19016 3' -63.4 NC_004684.1 + 18227 0.69 0.223285
Target:  5'- cCGCCG-AGacUGCGCCguaCUGCCCGGUGu -3'
miRNA:   3'- -GCGGCaUCcaGCGCGG---GACGGGCCAU- -5'
19016 3' -63.4 NC_004684.1 + 51984 0.69 0.223285
Target:  5'- aCGgUGUcGGccaUCGCGCCCUGC-CGGUAg -3'
miRNA:   3'- -GCgGCAuCC---AGCGCGGGACGgGCCAU- -5'
19016 3' -63.4 NC_004684.1 + 12743 0.71 0.165087
Target:  5'- gGCCG-AGGUCGaCGCCCUcuugGCCCGc-- -3'
miRNA:   3'- gCGGCaUCCAGC-GCGGGA----CGGGCcau -5'
19016 3' -63.4 NC_004684.1 + 18151 0.71 0.160908
Target:  5'- cCGCUGUGGGgcgacgugcCGaCGCCCgGCCCGGc- -3'
miRNA:   3'- -GCGGCAUCCa--------GC-GCGGGaCGGGCCau -5'
19016 3' -63.4 NC_004684.1 + 27071 0.73 0.130775
Target:  5'- gCGCCG-AGGUCGUG-CCUGCCgGGc- -3'
miRNA:   3'- -GCGGCaUCCAGCGCgGGACGGgCCau -5'
19016 3' -63.4 NC_004684.1 + 48994 0.75 0.081089
Target:  5'- cCGCCGaaguagUAGGUCGUGCCCUGgaacuugCCGGUGa -3'
miRNA:   3'- -GCGGC------AUCCAGCGCGGGACg------GGCCAU- -5'
19016 3' -63.4 NC_004684.1 + 41722 1.06 0.000376
Target:  5'- cCGCCGUAGGUCGCGCCCUGCCCGGUAc -3'
miRNA:   3'- -GCGGCAUCCAGCGCGGGACGGGCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.