miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19016 5' -55.7 NC_004684.1 + 1385 0.66 0.720362
Target:  5'- aGCUCcgggUgGGGCGGCGgcUACCGguacGGGCGg -3'
miRNA:   3'- -CGAG----AgCUUGCCGU--GUGGCaa--CCCGU- -5'
19016 5' -55.7 NC_004684.1 + 1991 0.66 0.730787
Target:  5'- --gCUCGAACuGCugGCC--UGGGCGc -3'
miRNA:   3'- cgaGAGCUUGcCGugUGGcaACCCGU- -5'
19016 5' -55.7 NC_004684.1 + 4968 0.7 0.487092
Target:  5'- gGCcUUCGGACuGCGCACCug-GGGCAg -3'
miRNA:   3'- -CGaGAGCUUGcCGUGUGGcaaCCCGU- -5'
19016 5' -55.7 NC_004684.1 + 7941 0.69 0.570252
Target:  5'- cGCcgC-CGAcCGGCgcACACCGgUGGGCAa -3'
miRNA:   3'- -CGa-GaGCUuGCCG--UGUGGCaACCCGU- -5'
19016 5' -55.7 NC_004684.1 + 9526 0.68 0.633737
Target:  5'- aGCUCUccgaccgCGAGCuGGUGCGCCgGUUGGaGCc -3'
miRNA:   3'- -CGAGA-------GCUUG-CCGUGUGG-CAACC-CGu -5'
19016 5' -55.7 NC_004684.1 + 13794 0.76 0.241605
Target:  5'- uGCUCaaGAGCGGCGCACUGUccgaccgccUGGaGCAc -3'
miRNA:   3'- -CGAGagCUUGCCGUGUGGCA---------ACC-CGU- -5'
19016 5' -55.7 NC_004684.1 + 14916 0.66 0.729749
Target:  5'- cGCgCUgGAgguggugGCGGcCAUGCCGUcGGGCAu -3'
miRNA:   3'- -CGaGAgCU-------UGCC-GUGUGGCAaCCCGU- -5'
19016 5' -55.7 NC_004684.1 + 16622 0.68 0.656416
Target:  5'- cGCg--CGGACauGGgACACCGaUGGGCGa -3'
miRNA:   3'- -CGagaGCUUG--CCgUGUGGCaACCCGU- -5'
19016 5' -55.7 NC_004684.1 + 18480 0.73 0.341149
Target:  5'- uGCUgUCGGugucCGGCACcgccACCGcUGGGCAg -3'
miRNA:   3'- -CGAgAGCUu---GCCGUG----UGGCaACCCGU- -5'
19016 5' -55.7 NC_004684.1 + 23751 0.73 0.365998
Target:  5'- uGCUCggugcgcaguUCGGGCcguggGGCGCGgCGUUGGGCGc -3'
miRNA:   3'- -CGAG----------AGCUUG-----CCGUGUgGCAACCCGU- -5'
19016 5' -55.7 NC_004684.1 + 24749 0.68 0.645623
Target:  5'- cGCUCaUCGcuGGCGGCaccaGCACCGgcgGcGGCGg -3'
miRNA:   3'- -CGAG-AGC--UUGCCG----UGUGGCaa-C-CCGU- -5'
19016 5' -55.7 NC_004684.1 + 25398 0.67 0.667187
Target:  5'- gGUUgUCGccAGCGGC-CACCGcgcGGGCAu -3'
miRNA:   3'- -CGAgAGC--UUGCCGuGUGGCaa-CCCGU- -5'
19016 5' -55.7 NC_004684.1 + 25686 0.69 0.559614
Target:  5'- cGCguccCUUGAACcGCACGCCGUcgccgcgcUGGGUg -3'
miRNA:   3'- -CGa---GAGCUUGcCGUGUGGCA--------ACCCGu -5'
19016 5' -55.7 NC_004684.1 + 27328 0.71 0.47708
Target:  5'- aGCUUUgaCGAcgGCGGUAuCGCCG-UGGGCAc -3'
miRNA:   3'- -CGAGA--GCU--UGCCGU-GUGGCaACCCGU- -5'
19016 5' -55.7 NC_004684.1 + 28889 0.72 0.419316
Target:  5'- ----cCGAACGGCGCGCCGU--GGCGa -3'
miRNA:   3'- cgagaGCUUGCCGUGUGGCAacCCGU- -5'
19016 5' -55.7 NC_004684.1 + 30698 0.71 0.457372
Target:  5'- cGCUCacgcCGGugGGCACGCCaacgaugcuGgcGGGCAu -3'
miRNA:   3'- -CGAGa---GCUugCCGUGUGG---------CaaCCCGU- -5'
19016 5' -55.7 NC_004684.1 + 30964 0.69 0.579867
Target:  5'- cGCUgUgGAACGGCguggucgGCACCGUUGagacgcugauGGCGc -3'
miRNA:   3'- -CGAgAgCUUGCCG-------UGUGGCAAC----------CCGU- -5'
19016 5' -55.7 NC_004684.1 + 32954 0.67 0.677927
Target:  5'- gGCcgCUCGGGCaGCACACUGcuguccucGGGCGc -3'
miRNA:   3'- -CGa-GAGCUUGcCGUGUGGCaa------CCCGU- -5'
19016 5' -55.7 NC_004684.1 + 34147 0.66 0.741117
Target:  5'- cGC-CUCGGGCGGCACGgUGcUGcucaccGGCAc -3'
miRNA:   3'- -CGaGAGCUUGCCGUGUgGCaAC------CCGU- -5'
19016 5' -55.7 NC_004684.1 + 38501 0.68 0.645623
Target:  5'- gGCggUCGccACGGCGCGCCGUUcGGUg -3'
miRNA:   3'- -CGagAGCu-UGCCGUGUGGCAAcCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.