Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19016 | 5' | -55.7 | NC_004684.1 | + | 7941 | 0.69 | 0.570252 |
Target: 5'- cGCcgC-CGAcCGGCgcACACCGgUGGGCAa -3' miRNA: 3'- -CGa-GaGCUuGCCG--UGUGGCaACCCGU- -5' |
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19016 | 5' | -55.7 | NC_004684.1 | + | 25686 | 0.69 | 0.559614 |
Target: 5'- cGCguccCUUGAACcGCACGCCGUcgccgcgcUGGGUg -3' miRNA: 3'- -CGa---GAGCUUGcCGUGUGGCA--------ACCCGu -5' |
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19016 | 5' | -55.7 | NC_004684.1 | + | 65754 | 0.7 | 0.528066 |
Target: 5'- cCUCgCGGGCGuuggccgccGCGCGCCGgUGGGCGc -3' miRNA: 3'- cGAGaGCUUGC---------CGUGUGGCaACCCGU- -5' |
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19016 | 5' | -55.7 | NC_004684.1 | + | 49926 | 0.7 | 0.507403 |
Target: 5'- ---gUUGGACGGCaacuccACACCGUcGGGCAc -3' miRNA: 3'- cgagAGCUUGCCG------UGUGGCAaCCCGU- -5' |
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19016 | 5' | -55.7 | NC_004684.1 | + | 4968 | 0.7 | 0.487092 |
Target: 5'- gGCcUUCGGACuGCGCACCug-GGGCAg -3' miRNA: 3'- -CGaGAGCUUGcCGUGUGGcaaCCCGU- -5' |
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19016 | 5' | -55.7 | NC_004684.1 | + | 27328 | 0.71 | 0.47708 |
Target: 5'- aGCUUUgaCGAcgGCGGUAuCGCCG-UGGGCAc -3' miRNA: 3'- -CGAGA--GCU--UGCCGU-GUGGCaACCCGU- -5' |
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19016 | 5' | -55.7 | NC_004684.1 | + | 30698 | 0.71 | 0.457372 |
Target: 5'- cGCUCacgcCGGugGGCACGCCaacgaugcuGgcGGGCAu -3' miRNA: 3'- -CGAGa---GCUugCCGUGUGG---------CaaCCCGU- -5' |
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19016 | 5' | -55.7 | NC_004684.1 | + | 28889 | 0.72 | 0.419316 |
Target: 5'- ----cCGAACGGCGCGCCGU--GGCGa -3' miRNA: 3'- cgagaGCUUGCCGUGUGGCAacCCGU- -5' |
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19016 | 5' | -55.7 | NC_004684.1 | + | 55789 | 0.72 | 0.41839 |
Target: 5'- aGCUCggugccgUCGuccaGGCGCACCGgcGGGCu -3' miRNA: 3'- -CGAG-------AGCuug-CCGUGUGGCaaCCCGu -5' |
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19016 | 5' | -55.7 | NC_004684.1 | + | 45536 | 0.72 | 0.401022 |
Target: 5'- cCUCuUCGAcCGGCGCACCGggGGaCAg -3' miRNA: 3'- cGAG-AGCUuGCCGUGUGGCaaCCcGU- -5' |
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19016 | 5' | -55.7 | NC_004684.1 | + | 23751 | 0.73 | 0.365998 |
Target: 5'- uGCUCggugcgcaguUCGGGCcguggGGCGCGgCGUUGGGCGc -3' miRNA: 3'- -CGAG----------AGCUUG-----CCGUGUgGCAACCCGU- -5' |
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19016 | 5' | -55.7 | NC_004684.1 | + | 18480 | 0.73 | 0.341149 |
Target: 5'- uGCUgUCGGugucCGGCACcgccACCGcUGGGCAg -3' miRNA: 3'- -CGAgAGCUu---GCCGUG----UGGCaACCCGU- -5' |
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19016 | 5' | -55.7 | NC_004684.1 | + | 48939 | 0.74 | 0.317543 |
Target: 5'- cCUCgucgcCGAACGGCACGUCGgcGGGCGg -3' miRNA: 3'- cGAGa----GCUUGCCGUGUGGCaaCCCGU- -5' |
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19016 | 5' | -55.7 | NC_004684.1 | + | 45323 | 0.75 | 0.274076 |
Target: 5'- cGUUgaUGAACGGCACACCGgcGGGgGu -3' miRNA: 3'- -CGAgaGCUUGCCGUGUGGCaaCCCgU- -5' |
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19016 | 5' | -55.7 | NC_004684.1 | + | 13794 | 0.76 | 0.241605 |
Target: 5'- uGCUCaaGAGCGGCGCACUGUccgaccgccUGGaGCAc -3' miRNA: 3'- -CGAGagCUUGCCGUGUGGCA---------ACC-CGU- -5' |
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19016 | 5' | -55.7 | NC_004684.1 | + | 41756 | 1.11 | 0.000872 |
Target: 5'- cGCUCUCGAACGGCACACCGUUGGGCAg -3' miRNA: 3'- -CGAGAGCUUGCCGUGUGGCAACCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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