miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19017 3' -57.4 NC_004684.1 + 42520 0.66 0.682674
Target:  5'- -aCGGCGCGcUCAccGCcGUGGUCGGCGu -3'
miRNA:   3'- gcGCUGUGC-AGU--CGcCACCAGUCGUg -5'
19017 3' -57.4 NC_004684.1 + 32572 0.66 0.682674
Target:  5'- aGCaGACcgcCGUCGuCGGUGGUCAGguUc -3'
miRNA:   3'- gCG-CUGu--GCAGUcGCCACCAGUCguG- -5'
19017 3' -57.4 NC_004684.1 + 50390 0.66 0.673121
Target:  5'- uGCG-CAUGUCGGCGGggugcuugcuguuggGGUacacCAGCAg -3'
miRNA:   3'- gCGCuGUGCAGUCGCCa--------------CCA----GUCGUg -5'
19017 3' -57.4 NC_004684.1 + 57355 0.66 0.672057
Target:  5'- aCGCGugGCGaugauGCGcucccGGUCGGCGCg -3'
miRNA:   3'- -GCGCugUGCagu--CGCca---CCAGUCGUG- -5'
19017 3' -57.4 NC_004684.1 + 33810 0.66 0.672057
Target:  5'- aGCGGuucgGCGUCGGCGGgcGGUguGCcCg -3'
miRNA:   3'- gCGCUg---UGCAGUCGCCa-CCAguCGuG- -5'
19017 3' -57.4 NC_004684.1 + 54898 0.66 0.672057
Target:  5'- uGCGGCACGaggCGGCccuGGUGGcCgAGCGu -3'
miRNA:   3'- gCGCUGUGCa--GUCG---CCACCaG-UCGUg -5'
19017 3' -57.4 NC_004684.1 + 30210 0.66 0.670993
Target:  5'- cCGCG-CGCGUCgaugcucGGCGcgacGUGGcccUCGGCGCg -3'
miRNA:   3'- -GCGCuGUGCAG-------UCGC----CACC---AGUCGUG- -5'
19017 3' -57.4 NC_004684.1 + 49186 0.66 0.661404
Target:  5'- gGCGGCgGCGgCGGCGGccugcucGGUCGGC-Ca -3'
miRNA:   3'- gCGCUG-UGCaGUCGCCa------CCAGUCGuG- -5'
19017 3' -57.4 NC_004684.1 + 31662 0.66 0.661404
Target:  5'- aCGCuGGCACuGUCGGCGGUgcgGGUgaaaCAGgACc -3'
miRNA:   3'- -GCG-CUGUG-CAGUCGCCA---CCA----GUCgUG- -5'
19017 3' -57.4 NC_004684.1 + 64364 0.66 0.661404
Target:  5'- gGuCGGCGCgGUCAGCuccauGUGGUcCGGCAUc -3'
miRNA:   3'- gC-GCUGUG-CAGUCGc----CACCA-GUCGUG- -5'
19017 3' -57.4 NC_004684.1 + 6855 0.66 0.661404
Target:  5'- gGCGACGCc---GUGGUGGUgCuGCACu -3'
miRNA:   3'- gCGCUGUGcaguCGCCACCA-GuCGUG- -5'
19017 3' -57.4 NC_004684.1 + 21996 0.66 0.661404
Target:  5'- uGCGcCAgGgucCGGUGGagcUGGUCAGCAUc -3'
miRNA:   3'- gCGCuGUgCa--GUCGCC---ACCAGUCGUG- -5'
19017 3' -57.4 NC_004684.1 + 50018 0.66 0.650726
Target:  5'- uGCGcAC-CGUCGGCGGcagcgUGGcCGGUGCc -3'
miRNA:   3'- gCGC-UGuGCAGUCGCC-----ACCaGUCGUG- -5'
19017 3' -57.4 NC_004684.1 + 18558 0.66 0.650726
Target:  5'- -aCGACGCGaCGGCGGccgaGGUCAagaccGCGCu -3'
miRNA:   3'- gcGCUGUGCaGUCGCCa---CCAGU-----CGUG- -5'
19017 3' -57.4 NC_004684.1 + 55582 0.66 0.647519
Target:  5'- aGCGGCGCGcUCgcgcccuucuccacGGUGGccUGGUCGGCcCa -3'
miRNA:   3'- gCGCUGUGC-AG--------------UCGCC--ACCAGUCGuG- -5'
19017 3' -57.4 NC_004684.1 + 33711 0.66 0.644311
Target:  5'- aGCGGCAg--CGGCGGUGGcCcgaacuacucgacgcAGCGCg -3'
miRNA:   3'- gCGCUGUgcaGUCGCCACCaG---------------UCGUG- -5'
19017 3' -57.4 NC_004684.1 + 63539 0.66 0.640032
Target:  5'- aGCGGCGUGccuUCGGUguGGUcgucGGUCGGCACg -3'
miRNA:   3'- gCGCUGUGC---AGUCG--CCA----CCAGUCGUG- -5'
19017 3' -57.4 NC_004684.1 + 46058 0.66 0.640032
Target:  5'- aGCGcACACGgauGCGGcGGUC-GCGCc -3'
miRNA:   3'- gCGC-UGUGCaguCGCCaCCAGuCGUG- -5'
19017 3' -57.4 NC_004684.1 + 2075 0.66 0.640032
Target:  5'- gGUGgaGCGCGcCAGCucgcaacuGGUGGcgCAGCACu -3'
miRNA:   3'- gCGC--UGUGCaGUCG--------CCACCa-GUCGUG- -5'
19017 3' -57.4 NC_004684.1 + 40360 0.66 0.638962
Target:  5'- gGCGGCcuuggccuuggggGCcUCGGCGGUGGcggccuUCGGCAg -3'
miRNA:   3'- gCGCUG-------------UGcAGUCGCCACC------AGUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.