miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19017 5' -59.3 NC_004684.1 + 52147 0.66 0.529191
Target:  5'- -uGCGUG-GCAgcGGCGGGCcguaGCUGUc -3'
miRNA:   3'- ucCGUACuCGUa-CCGCCCGug--CGACA- -5'
19017 5' -59.3 NC_004684.1 + 43476 0.66 0.518854
Target:  5'- cGGCGgcAGCAggugcGGCGGGCGCaGCg-- -3'
miRNA:   3'- uCCGUacUCGUa----CCGCCCGUG-CGaca -5'
19017 5' -59.3 NC_004684.1 + 52229 0.66 0.518854
Target:  5'- cAGGU----GCGUGGCGGcggcggccagcuGCGCGCUGg -3'
miRNA:   3'- -UCCGuacuCGUACCGCC------------CGUGCGACa -5'
19017 5' -59.3 NC_004684.1 + 22355 0.66 0.508597
Target:  5'- uGGCGgcGGCGgcGGCGGuCGCGCUGg -3'
miRNA:   3'- uCCGUacUCGUa-CCGCCcGUGCGACa -5'
19017 5' -59.3 NC_004684.1 + 55648 0.66 0.478368
Target:  5'- uGGCGUGcguggaggagGGCcUGGCGGcGCACcaGCUGc -3'
miRNA:   3'- uCCGUAC----------UCGuACCGCC-CGUG--CGACa -5'
19017 5' -59.3 NC_004684.1 + 49924 0.66 0.478368
Target:  5'- cAGGUcgAUGAGCAgGGCGcGUACGgUGUu -3'
miRNA:   3'- -UCCG--UACUCGUaCCGCcCGUGCgACA- -5'
19017 5' -59.3 NC_004684.1 + 13100 0.66 0.475394
Target:  5'- gGGGCcgAUGcGCgcacccccggccggGUGGCGGcGCugGCUGa -3'
miRNA:   3'- -UCCG--UACuCG--------------UACCGCC-CGugCGACa -5'
19017 5' -59.3 NC_004684.1 + 19787 0.67 0.468489
Target:  5'- gGGGCGacaAG-AUGGCGGGCcUGCUGg -3'
miRNA:   3'- -UCCGUac-UCgUACCGCCCGuGCGACa -5'
19017 5' -59.3 NC_004684.1 + 59488 0.67 0.468489
Target:  5'- cGGC-UG-GC-UGGCggccaccaGGGCACGCUGa -3'
miRNA:   3'- uCCGuACuCGuACCG--------CCCGUGCGACa -5'
19017 5' -59.3 NC_004684.1 + 54818 0.67 0.467506
Target:  5'- uGGC-UGAGUucgaccgGGCGGucaacgaGCACGCUGg -3'
miRNA:   3'- uCCGuACUCGua-----CCGCC-------CGUGCGACa -5'
19017 5' -59.3 NC_004684.1 + 25200 0.67 0.44905
Target:  5'- cAGGCGcuGGCAccgggUGGCuucaccGGCACGCUGg -3'
miRNA:   3'- -UCCGUacUCGU-----ACCGc-----CCGUGCGACa -5'
19017 5' -59.3 NC_004684.1 + 4175 0.67 0.439499
Target:  5'- uGGCccgguUGcGCccGGCGGGCGCGgUGg -3'
miRNA:   3'- uCCGu----ACuCGuaCCGCCCGUGCgACa -5'
19017 5' -59.3 NC_004684.1 + 64937 0.67 0.430065
Target:  5'- cGGCgGUGAGCGccUGGCGGGCG-GUg-- -3'
miRNA:   3'- uCCG-UACUCGU--ACCGCCCGUgCGaca -5'
19017 5' -59.3 NC_004684.1 + 29787 0.67 0.420752
Target:  5'- cGGCAUGGGC--GGcCGGGCcCGCa-- -3'
miRNA:   3'- uCCGUACUCGuaCC-GCCCGuGCGaca -5'
19017 5' -59.3 NC_004684.1 + 47953 0.68 0.411561
Target:  5'- uGGCGUcGGCAcggcUGGCGGuGUACGCg-- -3'
miRNA:   3'- uCCGUAcUCGU----ACCGCC-CGUGCGaca -5'
19017 5' -59.3 NC_004684.1 + 30486 0.68 0.402495
Target:  5'- cGGCuaugacccGAGCGUGGgGcGGCugGCGCUGg -3'
miRNA:   3'- uCCGua------CUCGUACCgC-CCG--UGCGACa -5'
19017 5' -59.3 NC_004684.1 + 28570 0.68 0.393557
Target:  5'- cAGGCcgucGGGCAccgccaGGCGGGCAccgcCGCUGg -3'
miRNA:   3'- -UCCGua--CUCGUa-----CCGCCCGU----GCGACa -5'
19017 5' -59.3 NC_004684.1 + 30689 0.68 0.388256
Target:  5'- aAGGCgacacgcucacgccgGUGGGCAcgccaacgaugcUGGCGGGCAuCGCa-- -3'
miRNA:   3'- -UCCG---------------UACUCGU------------ACCGCCCGU-GCGaca -5'
19017 5' -59.3 NC_004684.1 + 58956 0.68 0.376072
Target:  5'- cAGGUucccuGGCccGGCGGGCGCGCggGUu -3'
miRNA:   3'- -UCCGuac--UCGuaCCGCCCGUGCGa-CA- -5'
19017 5' -59.3 NC_004684.1 + 16794 0.68 0.376072
Target:  5'- cGGCGcGucGUGUGGUGGGCGCGCc-- -3'
miRNA:   3'- uCCGUaCu-CGUACCGCCCGUGCGaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.