miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19018 3' -56.4 NC_004684.1 + 22261 0.66 0.690935
Target:  5'- -cGAGGcCUGGGugUACGAgaGCgACCGGUu -3'
miRNA:   3'- uaCUCC-GACCU--GUGUUa-CGgUGGCCG- -5'
19018 3' -56.4 NC_004684.1 + 54731 0.66 0.690935
Target:  5'- -cGcAGGCcaGGAgACAAUaCCGCCGGUu -3'
miRNA:   3'- uaC-UCCGa-CCUgUGUUAcGGUGGCCG- -5'
19018 3' -56.4 NC_004684.1 + 64705 0.66 0.680125
Target:  5'- --cAGGCcggGGAUGCGGUGCC--CGGCg -3'
miRNA:   3'- uacUCCGa--CCUGUGUUACGGugGCCG- -5'
19018 3' -56.4 NC_004684.1 + 22004 0.66 0.680125
Target:  5'- -gGAGGCcaugGGGC-CGGUGCuCGCCGa- -3'
miRNA:   3'- uaCUCCGa---CCUGuGUUACG-GUGGCcg -5'
19018 3' -56.4 NC_004684.1 + 10695 0.66 0.669269
Target:  5'- ---cGGUcgGGACGCGGUgGCUcgcaACCGGCa -3'
miRNA:   3'- uacuCCGa-CCUGUGUUA-CGG----UGGCCG- -5'
19018 3' -56.4 NC_004684.1 + 15973 0.66 0.669269
Target:  5'- gGUGAGGCcGuGACACcggcagagGCCGaaacguCCGGCu -3'
miRNA:   3'- -UACUCCGaC-CUGUGuua-----CGGU------GGCCG- -5'
19018 3' -56.4 NC_004684.1 + 49422 0.66 0.669269
Target:  5'- -gGAGcUUGGACAUggucuuGGUGCCGuuGGCc -3'
miRNA:   3'- uaCUCcGACCUGUG------UUACGGUggCCG- -5'
19018 3' -56.4 NC_004684.1 + 36932 0.66 0.669269
Target:  5'- -cGAGGCcgggUGGACAC---GCCuGCUGGUg -3'
miRNA:   3'- uaCUCCG----ACCUGUGuuaCGG-UGGCCG- -5'
19018 3' -56.4 NC_004684.1 + 9196 0.66 0.669269
Target:  5'- --aAGGUUGGGCGCAGUgggcgcGUgACCGGg -3'
miRNA:   3'- uacUCCGACCUGUGUUA------CGgUGGCCg -5'
19018 3' -56.4 NC_004684.1 + 3267 0.66 0.669269
Target:  5'- ---uGGCcggacaucgUGGACGCAcUGCUGCCGGa -3'
miRNA:   3'- uacuCCG---------ACCUGUGUuACGGUGGCCg -5'
19018 3' -56.4 NC_004684.1 + 44938 0.66 0.669269
Target:  5'- -gGAGcGC-GGGCGgGAUcGCCGCCGcGCc -3'
miRNA:   3'- uaCUC-CGaCCUGUgUUA-CGGUGGC-CG- -5'
19018 3' -56.4 NC_004684.1 + 54105 0.66 0.669269
Target:  5'- -cGAcGGCgc-GCACca-GCCACCGGCg -3'
miRNA:   3'- uaCU-CCGaccUGUGuuaCGGUGGCCG- -5'
19018 3' -56.4 NC_004684.1 + 50469 0.66 0.669269
Target:  5'- gGUGGGGCUGuucucaGCGAUGCuguUCGGCg -3'
miRNA:   3'- -UACUCCGACcug---UGUUACGgu-GGCCG- -5'
19018 3' -56.4 NC_004684.1 + 64663 0.66 0.668182
Target:  5'- cGUGuGGCcgugcggUGuGGCGCAcuUGCCcCCGGCa -3'
miRNA:   3'- -UACuCCG-------AC-CUGUGUu-ACGGuGGCCG- -5'
19018 3' -56.4 NC_004684.1 + 14922 0.66 0.658379
Target:  5'- -gGAGG-UGGugGCGgccAUGCCGuCgGGCa -3'
miRNA:   3'- uaCUCCgACCugUGU---UACGGU-GgCCG- -5'
19018 3' -56.4 NC_004684.1 + 7488 0.66 0.647466
Target:  5'- uUGGccuGGCUGGuugucuacGCGCug-GCCGCCGcGCg -3'
miRNA:   3'- uACU---CCGACC--------UGUGuuaCGGUGGC-CG- -5'
19018 3' -56.4 NC_004684.1 + 61742 0.66 0.647466
Target:  5'- cUGAGGCaGGAaucc--GCCACgGGCg -3'
miRNA:   3'- uACUCCGaCCUguguuaCGGUGgCCG- -5'
19018 3' -56.4 NC_004684.1 + 9460 0.66 0.647466
Target:  5'- -cGcAGGC-GGucgGCAAUGUCAUCGGCg -3'
miRNA:   3'- uaC-UCCGaCCug-UGUUACGGUGGCCG- -5'
19018 3' -56.4 NC_004684.1 + 61454 0.66 0.646373
Target:  5'- --cAGGUUGGACcgcccgguggccaGCGcgGCCAgCCGGUc -3'
miRNA:   3'- uacUCCGACCUG-------------UGUuaCGGU-GGCCG- -5'
19018 3' -56.4 NC_004684.1 + 45094 0.67 0.636538
Target:  5'- -cGGGGUUcGGCACc--GCCGCCGcGCg -3'
miRNA:   3'- uaCUCCGAcCUGUGuuaCGGUGGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.