miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19018 5' -61 NC_004684.1 + 11941 0.66 0.499003
Target:  5'- -cGCUGgccaUGGUCGCCagccuggcaccugcgGCGCCa-CCGCg -3'
miRNA:   3'- acCGACa---ACUAGCGG---------------CGCGGgcGGCG- -5'
19018 5' -61 NC_004684.1 + 44991 0.66 0.495072
Target:  5'- gGGCUGguuagGAaucCGCCGaCGC-CGCCuGCa -3'
miRNA:   3'- aCCGACaa---CUa--GCGGC-GCGgGCGG-CG- -5'
19018 5' -61 NC_004684.1 + 56721 0.66 0.495072
Target:  5'- cUGGCgGUgcUGAU-GCCGCGCCaGCaCGg -3'
miRNA:   3'- -ACCGaCA--ACUAgCGGCGCGGgCG-GCg -5'
19018 5' -61 NC_004684.1 + 45101 0.66 0.495072
Target:  5'- cGGCaccgc--CGCCGCGCgggccuuggCCGCCGCc -3'
miRNA:   3'- aCCGacaacuaGCGGCGCG---------GGCGGCG- -5'
19018 5' -61 NC_004684.1 + 62077 0.66 0.495072
Target:  5'- -uGCUGcacGGUCGCCaGCGCgUCGUCGUa -3'
miRNA:   3'- acCGACaa-CUAGCGG-CGCG-GGCGGCG- -5'
19018 5' -61 NC_004684.1 + 1606 0.66 0.485307
Target:  5'- cGGCauc-GGUCGCCGUGCgcgcgcccaCCGgCGCg -3'
miRNA:   3'- aCCGacaaCUAGCGGCGCG---------GGCgGCG- -5'
19018 5' -61 NC_004684.1 + 66412 0.66 0.485307
Target:  5'- gGGCUGgcGGgu-CCGU-CCCGCCGUa -3'
miRNA:   3'- aCCGACaaCUagcGGCGcGGGCGGCG- -5'
19018 5' -61 NC_004684.1 + 52735 0.66 0.485307
Target:  5'- gGcGCUGUccuccaGGUCGUCGUGgCCGCUGg -3'
miRNA:   3'- aC-CGACAa-----CUAGCGGCGCgGGCGGCg -5'
19018 5' -61 NC_004684.1 + 51799 0.66 0.485307
Target:  5'- aGGUaGUcccGGUCcacggccagGCCGCGCgCGCUGCg -3'
miRNA:   3'- aCCGaCAa--CUAG---------CGGCGCGgGCGGCG- -5'
19018 5' -61 NC_004684.1 + 4549 0.66 0.484335
Target:  5'- gGcGCUGUggcUGAUUGCCGagGCCaucgaggCGCUGCu -3'
miRNA:   3'- aC-CGACA---ACUAGCGGCg-CGG-------GCGGCG- -5'
19018 5' -61 NC_004684.1 + 51613 0.66 0.475634
Target:  5'- aGG-UGUUccuUgGCCGCGCUCGgCGCa -3'
miRNA:   3'- aCCgACAAcu-AgCGGCGCGGGCgGCG- -5'
19018 5' -61 NC_004684.1 + 20170 0.66 0.474672
Target:  5'- aGGCgGUgcgcUGAUgcauaccuaccacCGCCGCaccGUUCGCCGCg -3'
miRNA:   3'- aCCGaCA----ACUA-------------GCGGCG---CGGGCGGCG- -5'
19018 5' -61 NC_004684.1 + 34403 0.66 0.466058
Target:  5'- gGGCUGUgcaaUGGgaggCGuUCGCGCCCGaggacaGCa -3'
miRNA:   3'- aCCGACA----ACUa---GC-GGCGCGGGCgg----CG- -5'
19018 5' -61 NC_004684.1 + 28259 0.66 0.466058
Target:  5'- aGGUUGUgcaGGUUGCCGaC-CCCG-CGCa -3'
miRNA:   3'- aCCGACAa--CUAGCGGC-GcGGGCgGCG- -5'
19018 5' -61 NC_004684.1 + 43350 0.66 0.456584
Target:  5'- cGGg-GUUGAUCaCCGCGCCgggcaccuUGCCGg -3'
miRNA:   3'- aCCgaCAACUAGcGGCGCGG--------GCGGCg -5'
19018 5' -61 NC_004684.1 + 40784 0.66 0.456584
Target:  5'- uUGGCga-UGA-CGCCGcCGCCgGUgGCg -3'
miRNA:   3'- -ACCGacaACUaGCGGC-GCGGgCGgCG- -5'
19018 5' -61 NC_004684.1 + 43586 0.66 0.450949
Target:  5'- gUGGaCUGgaacagagUGA-CGCCaGCGCCgaucaucgcgcccaaCGCCGCg -3'
miRNA:   3'- -ACC-GACa-------ACUaGCGG-CGCGG---------------GCGGCG- -5'
19018 5' -61 NC_004684.1 + 16268 0.66 0.447214
Target:  5'- cGG-UGUUcg-CGCCGgGCCCGaCGCg -3'
miRNA:   3'- aCCgACAAcuaGCGGCgCGGGCgGCG- -5'
19018 5' -61 NC_004684.1 + 29575 0.66 0.447214
Target:  5'- -cGCUGUguaggGcgCGCCGUGCCCcacacacucaCCGCc -3'
miRNA:   3'- acCGACAa----CuaGCGGCGCGGGc---------GGCG- -5'
19018 5' -61 NC_004684.1 + 8856 0.66 0.447214
Target:  5'- gGGcCUGgacgUG-UCGCCugaGCGCCUGCUGg -3'
miRNA:   3'- aCC-GACa---ACuAGCGG---CGCGGGCGGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.